Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0171 ATGGGGAATCCGAAACAAAAATGGACTTCGGAGGAGGAGGAGGCGCTACGCGCCGGCGTAGCGAAGCACGGCACCGGTAAGTGGAAGAATATCCAGAAGGATCCGGAGTTCAACCATTTTCTGTTCACCCGTTCAAACATCGATCTGAAGGACAAATGGCGGAATATGAGTGTCAGTGCTAGTGGACAAGGTCCAAGGGAAAAATCACGGACTCCAAAAACAAAGGCCAACACAGATGCTCCCAGTGCTGCTACCGTGTCCAATCCACAAAATTCCAGTTCAGCTGCTCCTGTTACAGGTGATGCCTCAGCAGATGCCATGGATGATGCTTCAAAGAATATACTGGATGGGAAAAGCGCTCCAAGGTACAATGCAATGATTTTTGAAGCGCTTTCAGCCCTAAAAGAGCCAAATGGATCAGACACTAGTACGATTGTTAGCTTTATTGAGCAAAGACATGAGGTGCCACAAAACTTTAGGAGGTTATTAAGTTCAAGATTAAGACGGCTTGTTGCACAAGACAAACTTGAAAAGGTTCAAAACTGCTACAAGATAAAGAGAGATCCCTCATTTGGGACTAAAACACCTACCCCGAAACAGAAGGACATCAGACCTAGGCAGTCACAAAGCACAGATTATGTAGCCTCCATCGAGACGGTAGAAGAAGCAGCAGTGGCTGCTGCCTACAAGGTCGCTGAAGCAGAAAACAAGTCATTTGTAGCAGCTGAAGCAGTCAAGGAGGCAGAGAGGGTTGCAAAGATGGCTGAAGAGTCAGAAGCGATGCTACAGTTCACACTAGAGATACTTGAGAAATGTTCTCGTGGTGAAGTTGTGTACATAGCATAG 846 0.4645 MGNPKQKWTSEEEEALRAGVAKHGTGKWKNIQKDPEFNHFLFTRSNIDLKDKWRNMSVSASGQGPREKSRTPKTKANTDAPSAATVSNPQNSSSAAPVTGDASADAMDDASKNILDGKSAPRYNAMIFEALSALKEPNGSDTSTIVSFIEQRHEVPQNFRRLLSSRLRRLVAQDKLEKVQNCYKIKRDPSFGTKTPTPKQKDIRPRQSQSTDYVASIETVEEAAVAAAYKVAEAENKSFVAAEAVKEAERVAKMAEESEAMLQFTLEILEKCSRGEVVYIA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0171 281 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi11g0171 281 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Vvi11g0171 281 PANTHER SINGLE MYB HISTONE 4 1 278 IPR044597 GO:0003691
Vvi11g0171 281 FunFam Telomere repeat-binding factor 1 8 87 - -
Vvi11g0171 281 Gene3D - 117 202 IPR036388 -
Vvi11g0171 281 FunFam Telomere repeat-binding factor 1 2 58 - -
Vvi11g0171 281 SUPERFAMILY "Winged helix" DNA-binding domain 116 199 IPR036390 -
Vvi11g0171 281 MobiDBLite consensus disorder prediction 75 99 - -
Vvi11g0171 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vvi11g0171 281 SMART sant 4 59 IPR001005 -
Vvi11g0171 281 FunFam Telomere repeat-binding factor 1 115 196 - -
Vvi11g0171 281 MobiDBLite consensus disorder prediction 193 210 - -
Vvi11g0171 281 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vvi11g0171 281 Gene3D - 8 87 - -
Vvi11g0171 281 Pfam linker histone H1 and H5 family 121 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi11g0171 281 MobiDBLite consensus disorder prediction 187 210 - -
Vvi11g0171 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi11g0171 281 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi11g0171 281 MobiDBLite consensus disorder prediction 52 105 - -
Vvi11g0171 281 Coils Coil 217 237 - -
Vvi11g0171 281 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0171 Vvi-Chr11 1530289 1542576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0171 1 281 Single Myb Histone (SMH) Gene Family AT1G72740 51.579 2.53e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi11g0171 Linker_histone 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0171 K09422 - vvi:100254369 503.827