Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0164 ATGACAGCTGAGAAGTCAACGCTGATATCTGTGGCGGCGATGACGTCAGTCGCCGTGGCCGTTAACGGCGGCCCCGGCAGCAGAGGCAACGGAAGCCGCCGGGCCGTTCGTTGGGCGGTGGAGAATCTTTCGGCTGATGCCGATACGTTAATCTTAATTCACGTCATGCCGGCAATCACTTCAATCCCAACTCCATCAGGAGAGCAAATACCCATCAATGAATTGGACGCAAATGTGGTGGAATTGTATGTCCAGGACATGAGAGCCAAGTTTGAACAAATCTTTCTCCCATTTAAGAAACTATGCAAAACTCTAAATGTAGAAACTTTGGTGCTGGAAGGTAAAAATCCTGCAACAGTGCTTCTAAGATACGCCTCTGAGTCAGGGATTAAAAGCTTGGTTTTGGGCTCTTGCTTTTCAAACTGCATTTTGAGGAAGCTAAGGGGACCAGGTGTACCATCAACTGTCCTAAGATATGCTCCTGACACTTGCGATGTTTATGTTATATCTAGACGCAGACTTAGAAAAAAATCAACCAATCCCTCATCCTTCAGCAAGACGAGCTCTAGACACTGGTTTGTCACTCGAAGAAAACTTACTGAGGGTCCCAATGGTATTAATGAACAAATATCTGGTTTTTCCACTTTGGGGTCCAAAGTTCGTAAAATCTTTGGAGCTTCTTCATTATCCGAACTTAGTTTCTCAAGTTCTCAAGCATTTACACATCAGGGTTCTACAAATGCTAGTATAGATCAGGAAAGTTATCATCAAAACCTGGGAGATAATAATCAGGAGACTCTTACAGTTAAAAGTTGCAATTCCATGGCTTCTACCAAAAGTGAGCAGGCTGAAGTAGAAAAATTGCGGCTAGAATTACAAGATGCTGTTTCCATGTATGAAAGAGCATGTGAAGAGCTGGTCCATACCCAAAGCAAGGTCCAAATACTTTCTTCTGAATGCATTGAAGAAAGAAGAAAAGTGAATGCTGCCCTGGAAAGAGAAGGAACTTTCAGGAAAATTGCTTCAGAAGAGAAAGCAAAGCATTTGGAAACAATGGAGGAGGTTGAGGTGGCAAAAAACTTGCTTGCTATAGAGGTCAATGGTAGGCAGATAGCCGAACTACATGCTCTGAAAGAGTCCTCAGAAAAACAGAAAATCGTTGATGAACTCTTCTCAAGCGACAAGAGGTACAGAAAGTACACAAAGGATGAAATAGAGGTAGCAACAGATTTTTTCTCTGAGAGCAGGGTGATTGGCGAAGGAGGGTATGGGAAGGTCTACAAGGGTAACCTTGATCATACCCCAGTAGCTGTCAAGGTTATTCATTCTGATGCATGTGACAGGAAAGAGGAGTTCCTAAGAGAGGTTGAAGTCCTTAGCCACCTACGCCATCCACACATGGTTTTGCTTCTAGGAGCCTGTCCTGAGAGTGGTTGTCTGGTTTATGAATACATGGAAAATGGAAGCCTGGACAAACATATTTTCCGCCAAGACGGAAGGATGCCTCTTCCTTGGTTTGTTCGGTTCCAAATTATCTTTGAGGTGGCTTGCGGGCTTGCATTCTTACACAGCTCAAAGCCAGAGCCTATTGTTCATCGTGATCTAAAACCGGGTAATATCTTGTTAGACAGAAACTATGTGAGCAAAATTGGAGATGTTGGGCTGGCTAAGCTCATTTCAGATGCCGTGCCTGACAACATCACAGAGTACAGAGACTCCATTCTAGCTGGTACACTCTTCTACATGGATCCTGAGTATCAGAGAACTGGCACCATTCGACCCAAATCAGATGTATACGCTTTTGGTGTCATAATCCTCCAATTATTGGCAGCTCGCCATCCAAATGGCCTTATATTGACAGTTGAAAATGCCATTACTAACGGTACTTTTGCAGACACGTTGGATAAGTCAATTGCAGATTGGCCAATTGCTGAAACAGAAGAACTAGCTTGTCTTGCACTAAAATGTTCCAAACTCAGATGCCGGGATAGGCCAGATCTTGAGACTGAAGTTCTGCCTGTTCTCAAAAGACTTGCAGATTTTGCAGATGCTAGTAAAAGGGTAGAAATAAACAATACTTCCGCGCCCAAGCACTACTTCTGTCCAATCCTTCAGGAAGTAATGGAGGATCCACACATTGCAGCTGATGGTTTTACATACGAGCATCGAGCGATCAAGGCATGGCTCGATAGACACGATGTTTCACCAGTGACAAAGTGGACGTTCCAGCACAAAATGCTAACTCCAAACCAGACATTACGTTCTGCAATACAAGAATGGAGGTGTCGTGTAGAATCATCCAGTAACTGA 2310 0.4385 MTAEKSTLISVAAMTSVAVAVNGGPGSRGNGSRRAVRWAVENLSADADTLILIHVMPAITSIPTPSGEQIPINELDANVVELYVQDMRAKFEQIFLPFKKLCKTLNVETLVLEGKNPATVLLRYASESGIKSLVLGSCFSNCILRKLRGPGVPSTVLRYAPDTCDVYVISRRRLRKKSTNPSSFSKTSSRHWFVTRRKLTEGPNGINEQISGFSTLGSKVRKIFGASSLSELSFSSSQAFTHQGSTNASIDQESYHQNLGDNNQETLTVKSCNSMASTKSEQAEVEKLRLELQDAVSMYERACEELVHTQSKVQILSSECIEERRKVNAALEREGTFRKIASEEKAKHLETMEEVEVAKNLLAIEVNGRQIAELHALKESSEKQKIVDELFSSDKRYRKYTKDEIEVATDFFSESRVIGEGGYGKVYKGNLDHTPVAVKVIHSDACDRKEEFLREVEVLSHLRHPHMVLLLGACPESGCLVYEYMENGSLDKHIFRQDGRMPLPWFVRFQIIFEVACGLAFLHSSKPEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAVPDNITEYRDSILAGTLFYMDPEYQRTGTIRPKSDVYAFGVIILQLLAARHPNGLILTVENAITNGTFADTLDKSIADWPIAETEELACLALKCSKLRCRDRPDLETEVLPVLKRLADFADASKRVEINNTSAPKHYFCPILQEVMEDPHIAADGFTYEHRAIKAWLDRHDVSPVTKWTFQHKMLTPNQTLRSAIQEWRCRVESSSN* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0164 769 Pfam Universal stress protein family 31 161 IPR006016 -
Vvi11g0164 769 Pfam Protein tyrosine and serine/threonine kinase 415 668 IPR001245 GO:0004672|GO:0006468
Vvi11g0164 769 ProSiteProfiles Protein kinase domain profile. 412 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0164 769 SMART Ubox_2 698 760 IPR003613 GO:0004842|GO:0016567
Vvi11g0164 769 Coils Coil 285 305 - -
Vvi11g0164 769 PANTHER OS02G0152300 PROTEIN 17 759 - -
Vvi11g0164 769 FunFam Os07g0541700 protein 485 573 - -
Vvi11g0164 769 Gene3D HUPs 12 180 IPR014729 -
Vvi11g0164 769 Gene3D Phosphorylase Kinase; domain 1 391 484 - -
Vvi11g0164 769 SUPERFAMILY Protein kinase-like (PK-like) 395 668 IPR011009 -
Vvi11g0164 769 CDD RING-Ubox_WDSUB1-like 696 750 - -
Vvi11g0164 769 CDD STK_N 16 171 - -
Vvi11g0164 769 SMART serkin_6 412 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0164 769 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 170 - -
Vvi11g0164 769 Gene3D Transferase(Phosphotransferase) domain 1 485 695 - -
Vvi11g0164 769 Pfam U-box domain 695 762 IPR003613 GO:0004842|GO:0016567
Vvi11g0164 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 767 IPR013083 -
Vvi11g0164 769 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 384 484 - -
Vvi11g0164 769 ProSitePatterns Protein kinases ATP-binding region signature. 418 439 IPR017441 GO:0005524
Vvi11g0164 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vvi11g0164 769 SUPERFAMILY RING/U-box 687 763 - -
Vvi11g0164 769 ProSiteProfiles U-box domain profile. 694 767 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0164 Vvi-Chr11 1471185 1476348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0164 13 763 Plant U-box Gene Family AT5G57035 56.177 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi11g0164 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0164 - - vvi:100242304 1500.72