Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0161 ATGGAGAGGGTGGCTGCAGCCAAGCAGTTCATCGAGAGCCACTACAAAGCCCATATGAAGCTCATTCAGGAACGCAAGCAAAGGCGCTCGGTGCTGGAAAGAAGGTTAGCATCTTCAGATGTACCAGAAGAGGAACAAATCAATATAATTAAGGACTTGGAGCGCAAAGAGACAGAATATATGCGACTTAAACGGCACAAAATTTGTGTTGATGATTTTGAGAACCTAACTATTATAGGGAGAGGGGCTTTTGGAGAGGTCCGATTGTGTCGGGAGAGGTTATCTGGCAATATTTATGCCATGAAAAAGCTAAAGAAGTCGGAAATGCTAAGCAGGGGACAGGTGGAACATGTTAGAGCTGAAAGGAATTTGCTTGCAGAAGTTGACAGCCATTTCATTGTAAAACTTTATTATTCTTTTCAAGATGATGAGTACTTGTACTTAATTATGGAATATCTGCCTGGTGGTGACATGATGACTTTGCTGATGAGAGAAGAGACTTTAACTGAAACTGTGGCTAAGTTTTACGTAGCTCAAAGTGTCCTGGCCATAGAGTCCATTCATAAACATAACTACATTCACAGAGATATAAAGCCAGACAACCTTATATTGGACATAAATGGTCACATGAAGCTCTCTGACTTTGGCCTTTGCAAGCCTCTTGACTGTTCAAATCTAGCTGCTATAAATCAACATAGGGCCGTCAATTATGAACGCCTGAAGGAATCCATGGATGTTGATGAATCCTGTCCAAATTATGAGCATGTGAAACATTGGAAAAGTTCCCTTGAACAACTTCAGCAGTGGCAGAAGAGCAGGAGGACATTGGCATTCTCCACGGTAGGCACACCGGATTATATTGCTCCAGAAGTCTTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCACTAGGTGCAATTATGTATGAGATGCTTGTTGGATATCCCCCATTCTACTCTGATGACCCAATAACAACATGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTTCCTGAGGAGGCAAGGTTGACCCCTGAAGCAAAGGATCTGATCTCGAGGATGCTTTCTGATGTGGACCATAGGCTCGGTACTAATGGGGCAGCAGAAATAAAAGCACATCCATGGTTCAAGGATGTTGAATGGGACAAACTCTACGAGATGGAGGCAGCATTTAAACCAGAGGTCAATGGAGAACTTGATACTCAGAATTTTATGAAATTTGATGAGGTGGATCCTCCAAAACCAACAAGAACTGGATCTGGAATGTCAAGGAAGCTGCTTTTAACTCCCAAAGATCTAAGTTTTGTGGGCTATACATACAAGAATTTTGATGCTATCAAAGCAGCACGCCATTCTTTTGGTATGCGACATTTGTTCTACAAAGAGTTACTTCTTAGTTTCGATTTCTTACTGTTGCATGCTATGCTTCATCAGACAAATCCTCTTAAGATGTTCCTTTTCTTCTTTTATTTTGCATGCATATAG 1497 0.4122 MERVAAAKQFIESHYKAHMKLIQERKQRRSVLERRLASSDVPEEEQINIIKDLERKETEYMRLKRHKICVDDFENLTIIGRGAFGEVRLCRERLSGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVDSHFIVKLYYSFQDDEYLYLIMEYLPGGDMMTLLMREETLTETVAKFYVAQSVLAIESIHKHNYIHRDIKPDNLILDINGHMKLSDFGLCKPLDCSNLAAINQHRAVNYERLKESMDVDESCPNYEHVKHWKSSLEQLQQWQKSRRTLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEEARLTPEAKDLISRMLSDVDHRLGTNGAAEIKAHPWFKDVEWDKLYEMEAAFKPEVNGELDTQNFMKFDEVDPPKPTRTGSGMSRKLLLTPKDLSFVGYTYKNFDAIKAARHSFGMRHLFYKELLLSFDFLLLHAMLHQTNPLKMFLFFFYFACI* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0161 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vvi11g0161 498 ProSiteProfiles Protein kinase domain profile. 73 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0161 498 FunFam Non-specific serine/threonine protein kinase 279 398 - -
Vvi11g0161 498 SMART serkin_6 73 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0161 498 FunFam Non-specific serine/threonine protein kinase 399 409 - -
Vvi11g0161 498 FunFam Non-specific serine/threonine protein kinase 34 156 - -
Vvi11g0161 498 SMART pkinase_C_6 381 446 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi11g0161 498 Gene3D Phosphorylase Kinase; domain 1 399 409 - -
Vvi11g0161 498 Gene3D Phosphorylase Kinase; domain 1 71 156 - -
Vvi11g0161 498 ProSiteProfiles AGC-kinase C-terminal domain profile. 381 454 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi11g0161 498 Pfam Protein kinase C terminal domain 399 444 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi11g0161 498 FunFam Non-specific serine/threonine protein kinase 157 224 - -
Vvi11g0161 498 CDD STKc_NDR_like 71 445 - -
Vvi11g0161 498 Pfam Protein kinase domain 73 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0161 498 Pfam Protein kinase domain 277 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0161 498 SUPERFAMILY Protein kinase-like (PK-like) 56 425 IPR011009 -
Vvi11g0161 498 CDD MobB_NDR_LATS-like 7 68 - -
Vvi11g0161 498 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 412 - -
Vvi11g0161 498 Gene3D Transferase(Phosphotransferase) domain 1 274 398 - -
Vvi11g0161 498 Gene3D Transferase(Phosphotransferase) domain 1 157 222 - -
Vvi11g0161 498 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0161 Vvi-Chr11 1448964 1458773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0161 1 458 AGC Kinase Gene Family AT4G33080 78.867 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vvi11g0161 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0161 K08790 - vvi:100252546 926.391