Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0159 ATGGAAGAGGTATCCCCTGCAGTCGCAGTGCCATTTAGGCTAGGTAATTTGATTTGTGATGACTCGAAGTTAACTGCACACATGGAAATTGCGGGGCTTAAGCTTATAGCAAACACAGCTACCTTGTTGTCAGAGCACCACCCTTATATGGTGTCACCTCTGGTATCCGGCTCTAGTGGGAATCAAGCTTTTAATTGCAATAATTCAGAGAGTGTACCCAATGAAGTAACAATAAATGATATTAGTTTGGCCTCCAGTCATTCCATAGAGGAGGAAAATGGGGAAGATGATTTCGGGTCATGGGGTGGAGGCCAATTGATGAATAATTCTTGTTCCCTGTCTGTGGCTGGTGATACTGAAAGTATTTGTAGTGAGGAATTCTTGGGTTTGAAGGGTTTCTCTGAGTTCAATTCACCAAGTTCAATGGATATAACAGAGAACCGTCATAGTCTTCAACTTAATGCTACTACTAATTTGCTGGAATCAACTGTTGAGTCGGAGCATGTAAGGGATGTTCTTGCTGTTGGAGGGGGTCTTGAGGGTGAGGGTGGTGAAGGGTCTGACCCAAAATTGTTTACCAGGGTTTTGGAGTTGACTAATGAAAGGAGGATGAATAGAACAGTTAGCGACAGCGTTTTTGAATTCAATTGTGTACCCCTTTGGGGATTCACATCCATCTGTGGAAGGAGACTGGAGATGGAAGATGCTGTTGCAGCTGTGCCCAATTTCTTGAAAATTCCTATTCAAACACTAACAGATGGCCTGCTTCTCAATGGCATGAACCCAGAATTAGATTATTTAACCGCGCATTTCTTTGGAGTCTACGATGGACATGGGGGCTGTCAGGTTGCGAACTATTGCAGGGATCGGTTGCATTTGGCTTTGGCTGAGGAGGTAGAACTGTTGAAAGAGAGCTTGTGTAATGGAAGTGCTGGAGGTAATTGGCAAGAACAGTGGGAGAAAGTCTTCTCCAATTGTTTTCTGAAAGTTGATTCTGTGATTGGAGGGGGTTGCAGAGGCAACACCGATGCCTCTGAAGCTGGCCCTTCTGAAGATAGTTCTACACTTGTTGCCTCTGAAACTGTTGGATCAACTGCTGTGGTTACCATTATTTGTCAAACTCACATCATAGTCGCAAATTGCGGTGATTCAAGGGCTGTACTGTGTCGTGGAAAAGTACCTGTGCCATTGTCAATAGATCACAAACCAAGTAGAGAAGACGAATATGCAAGGATAGAAGCTGCAGGAGGCAAGATCATACAGTGGGACGGCTTACGTGTATGTGGCGTTCTTGCAATGTCTAGGTCCATTGGTGATCGATACTTGAAACCATGGATCATCCCAGATCCAGAAGTAATGTACATTCCCCGAGAAAAAGAAGATGAGTGCCTTATTCTTGCCAGTGACGGGTTATGGGATGTCATGACGAACCAGGAGGTTTGTGACACAGCAAGAAGACGAATACTCCTCTGGCATAAAAAGAATGGTCATAACCCACCTGCAGAAAGGGGCAGGGGAGTTGATCCTGCAGCTCAAGCTGCAGCAGAGTGTCTCTCAAAGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATAACCGTGGTCGTGGTGGACTTGAAACCTCGAAGGAAACTGAAGAGAAAAACTCAGCAGTAA 1653 0.4495 MEEVSPAVAVPFRLGNLICDDSKLTAHMEIAGLKLIANTATLLSEHHPYMVSPLVSGSSGNQAFNCNNSESVPNEVTINDISLASSHSIEEENGEDDFGSWGGGQLMNNSCSLSVAGDTESICSEEFLGLKGFSEFNSPSSMDITENRHSLQLNATTNLLESTVESEHVRDVLAVGGGLEGEGGEGSDPKLFTRVLELTNERRMNRTVSDSVFEFNCVPLWGFTSICGRRLEMEDAVAAVPNFLKIPIQTLTDGLLLNGMNPELDYLTAHFFGVYDGHGGCQVANYCRDRLHLALAEEVELLKESLCNGSAGGNWQEQWEKVFSNCFLKVDSVIGGGCRGNTDASEAGPSEDSSTLVASETVGSTAVVTIICQTHIIVANCGDSRAVLCRGKVPVPLSIDHKPSREDEYARIEAAGGKIIQWDGLRVCGVLAMSRSIGDRYLKPWIIPDPEVMYIPREKEDECLILASDGLWDVMTNQEVCDTARRRILLWHKKNGHNPPAERGRGVDPAAQAAAECLSKLALQKGSKDNITVVVVDLKPRRKLKRKTQQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0159 550 PANTHER PROTEIN PHOSPHATASE 171 538 IPR015655 GO:0004722|GO:0006470
Vvi11g0159 550 Gene3D - 207 548 IPR036457 -
Vvi11g0159 550 CDD PP2Cc 222 538 IPR001932 -
Vvi11g0159 550 FunFam Protein phosphatase 2C 16 208 548 - -
Vvi11g0159 550 ProSiteProfiles PPM-type phosphatase domain profile. 220 538 IPR001932 -
Vvi11g0159 550 Pfam Protein phosphatase 2C 225 531 IPR001932 -
Vvi11g0159 550 ProSitePatterns PPM-type phosphatase domain signature. 271 279 IPR000222 GO:0043169
Vvi11g0159 550 SUPERFAMILY PP2C-like 211 540 IPR036457 -
Vvi11g0159 550 SMART PP2C_4 210 536 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0159 Vvi-Chr11 1425009 1427236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0159 1 548 PP2C-type Phosphatase Gene Family AT1G17550 49.365 4.61e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0159 K14497 - vvi:100267957 1097.03