Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0158 ATGAGGAGAGGGCCCTTAAACCCTAGCAATCTCAAGCTCACTCTCCCTCCTGATGAGGATTCATTGACTAAGTTCCTAACTCAGAGTGGGACTTTTATGGATGGTGATCTGCTGGTCAACAGGGATGGAGTTCGAATTGTGTCTAAGAGCGAAGCTGAAGTGCCACCACTTATAAAGCCCTCTGACAACCAGTTGAGCTTGGCTGACATAGACACGATTAAAGTGATTGGGAAGGGCGCCGGTGGAACTGTGCAATTGGTGCAACATAAGTGGACTGGTCAATTTTTTGCGTTGAAGGTTATTCAAATGAATATTCAGGAGGCTGCTCTCAAGCATATTGCACAGGAGCTAAAAATTAACCAGTCATCACAATGCCCATATGTTGTCGTGTGTTACAAGTCTTTCTATGATAATGGTGCCTTTTCTATTATCTTAGAGTACATGGATGGTGGATCTCTTTTAGATTTTCTGAAAAAGGTCAAATCAATTCCAGAGCCGTATCTTGCTGCCATCTGTAATCAGGTGCTCAAGGGTTTGTCGTATCTTCATCATGAAAGACACATCATCCATAGGGACTTAAAACCTTCTAACTTGTTAATAAATCACAGAGGAGAAGTGAAGATCACCGACTTTGGTGTGAGTGCAATACTTACAAGCACCTCTGGGCAGGCAAATACTTTTGTCGGCACGTACAACTATATGTCTCCAGAGAGAATTAGTGGAGGTAAGTATGGCTCCAAAAGTGACATTTGGAGCTTGGGGTTGGTTTTGCTCGAGTGTGCCACTGGTCAGTTCCCGTATTCTCCACCAGAGCAAGGGGAAGGATGGACCAGCTTTTATGAACTTATGGAAGCCATTGTTGACCAGCCACCGCCTTGTGCATCTACTAATCAATTTTCTGCAGAATTCTGCTCTTTCATTTCTGCATGGTAA 933 0.4373 MRRGPLNPSNLKLTLPPDEDSLTKFLTQSGTFMDGDLLVNRDGVRIVSKSEAEVPPLIKPSDNQLSLADIDTIKVIGKGAGGTVQLVQHKWTGQFFALKVIQMNIQEAALKHIAQELKINQSSQCPYVVVCYKSFYDNGAFSIILEYMDGGSLLDFLKKVKSIPEPYLAAICNQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAILTSTSGQANTFVGTYNYMSPERISGGKYGSKSDIWSLGLVLLECATGQFPYSPPEQGEGWTSFYELMEAIVDQPPPCASTNQFSAEFCSFISAW* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0158 310 ProSiteProfiles Protein kinase domain profile. 70 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0158 310 Gene3D Transferase(Phosphotransferase) domain 1 150 310 - -
Vvi11g0158 310 CDD PKc_MAPKK_plant_like 68 309 - -
Vvi11g0158 310 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Vvi11g0158 310 PRINTS Tyrosine kinase catalytic domain signature 182 200 IPR001245 GO:0004672|GO:0006468
Vvi11g0158 310 PRINTS Tyrosine kinase catalytic domain signature 248 270 IPR001245 GO:0004672|GO:0006468
Vvi11g0158 310 PRINTS Tyrosine kinase catalytic domain signature 145 158 IPR001245 GO:0004672|GO:0006468
Vvi11g0158 310 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 16 309 - -
Vvi11g0158 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vvi11g0158 310 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vvi11g0158 310 Pfam Protein kinase domain 72 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0158 310 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Vvi11g0158 310 SUPERFAMILY Protein kinase-like (PK-like) 63 307 IPR011009 -
Vvi11g0158 310 SMART serkin_6 70 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0158 Vvi-Chr11 1417676 1420590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0158 1 309 MAP Kinase Kinase Gene Family AT4G29810 71.160 3.25e-165 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vvi11g0158 Pkinase 2.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0158 K20603 - vvi:100247508 626.32