Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi11g0155 | ATGGATGATGGATCCGAAAACAAAACCCTAGAATATTCCTTAAACCCAATAAAGTTGCAGGGTTCGGTCATCTCTCTACACAGAAGAAAGGAGGAGAGAGAGATGGTGTGGTTTCAGTGTGAGGACTGCGGAGAGAACCTGAAAAAGCCAAAATTGCCCAACCACTTCAGGATCTGTTCAGCAAACAAGTTGTCCTGCATTGATTGTGGAGAAACATTTGGGCAGCAAAGTGTTCAGGGCCACACGCAGTGTATTACTGAAGCGGAAAAATATGGCCCCAAGGGACAAGGGAAAGCTTTGAATGGTACCCCAGCAAAGGGCAAAAGTGATTCAAAGCAAAGGCCTGAAGTTGATATAACTGTTGGGTTATCTGAACGTCCTCCATGGTTTTGTAGTCTTTGCAATACAAAGGCTACTAGTAAGCAAGCACTACTACTCCATGCTGATGGGAAGAAGCACCGAGCTAAAGCGAGAGCCTTTCATGCTGCTAATGAACCTAAGCAGAAAGAAGAATCCACTCAAAATGGGAATGTTTCAACAGAAAACATTTCAAAGGATGAATCAATTGGCAATAAAAACGTCGAGGAGACAAAGATGCAAGATCCACCTCAAATGGCCACTGTTCATGACAGCTTAGAGACTGAAAATGAAAATTTGGCATCAAAGAAGAAAAGAAAACTTGATGCATCTGATAACAATGGTGATAGGAAAAAGGTTGGAGGTGATGCTTCAGGTGAATTAGGCAATGGTGAAGTGATTCAGGTTGAAAGGGCAGAAGCAGAGGAAACAGTACTACAGGTGAAGAAAGCGAAGCATGATGTATCCAAAGAACCAAGCTCTATGAAAGAAGATACCAAAAAGAAAATAAAGTGGAAGAAGTTGATCACTTCAGCCTTGAAATCCAATCCAGATGGGGTTCTTAAGATGAGGAAGTTGCGAAAACTTGTTATAAAGGCACTTGAGGAATCTGGCATTACAGATGATGAAACCCAACTAAGTGAGAAGCTTGAGCACAAGATTAATTCAAGCTCCAGATTCACAGTTGATAACAAGTATGTCCGTCTGGCAGCCAAAGATTGA | 1080 | 0.4194 | MDDGSENKTLEYSLNPIKLQGSVISLHRRKEEREMVWFQCEDCGENLKKPKLPNHFRICSANKLSCIDCGETFGQQSVQGHTQCITEAEKYGPKGQGKALNGTPAKGKSDSKQRPEVDITVGLSERPPWFCSLCNTKATSKQALLLHADGKKHRAKARAFHAANEPKQKEESTQNGNVSTENISKDESIGNKNVEETKMQDPPQMATVHDSLETENENLASKKKRKLDASDNNGDRKKVGGDASGELGNGEVIQVERAEAEETVLQVKKAKHDVSKEPSSMKEDTKKKIKWKKLITSALKSNPDGVLKMRKLRKLVIKALEESGITDDETQLSEKLEHKINSSSRFTVDNKYVRLAAKD* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi11g0155 | 359 | MobiDBLite | consensus disorder prediction | 92 | 115 | - | - | |
| Vvi11g0155 | 359 | MobiDBLite | consensus disorder prediction | 215 | 242 | - | - | |
| Vvi11g0155 | 359 | MobiDBLite | consensus disorder prediction | 169 | 187 | - | - | |
| Vvi11g0155 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 31 | 60 | IPR036236 | - | |
| Vvi11g0155 | 359 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 61 | 85 | - | - | |
| Vvi11g0155 | 359 | MobiDBLite | consensus disorder prediction | 264 | 287 | - | - | |
| Vvi11g0155 | 359 | Gene3D | Classic Zinc Finger | 123 | 169 | - | - | |
| Vvi11g0155 | 359 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 35 | 356 | IPR039999 | GO:0003677 | |
| Vvi11g0155 | 359 | Pfam | LYAR-type C2HC zinc finger | 64 | 91 | IPR014898 | - | |
| Vvi11g0155 | 359 | MobiDBLite | consensus disorder prediction | 155 | 252 | - | - | |
| Vvi11g0155 | 359 | SMART | ZnF_U1_5 | 126 | 160 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi11g0155 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 64 | 92 | IPR036236 | - | |
| Vvi11g0155 | 359 | FunFam | cell growth-regulating nucleolar protein-like | 35 | 84 | - | - | |
| Vvi11g0155 | 359 | Gene3D | - | 35 | 84 | - | - | |
| Vvi11g0155 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 123 | 162 | IPR036236 | - | |
| Vvi11g0155 | 359 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 35 | 60 | - | - | |
| Vvi11g0155 | 359 | Pfam | Zinc-finger of C2H2 type | 129 | 153 | - | - | |
| Vvi11g0155 | 359 | Coils | Coil | 209 | 229 | - | - | |
| Vvi11g0155 | 359 | FunFam | UBP1-associated proteins 1C | 123 | 166 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi11g0155 | Vvi-Chr11 | 1395341 | 1397987 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi11g0155 | 35 | 250 | C2H2 Transcription Factor Family | AT2G19380 | 35.644 | 3.69e-44 | 159 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi11g0155 | K15263 | - | vvi:100252615 | 637.491 |