Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0146 ATGACAAATGTGAATTCTCTGGGATTAATCTCTGCAAGGACGAGTGCTGAAGCAGTGGAGATCCTAAAGCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTCGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAAAGCTTTACACAGATGAAGATGGAACCCTGTTAGAATCTCGTTTCTGCGAGAAAGAACTCCTGCAGGTTGTTGAAAACTTGCCAGTCTTCTCCTATCTCGATGACCCTACCAATCCTTCATACTCATTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACCGACTCTGCAGGCTATTCCATTTTCAAGCGCATCCCCATATTTCTAGAGGAACTGGAGGAGAAACTTATTGAGAAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAATACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATAG 525 0.4305 MTNVNSLGLISARTSAEAVEILKLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKKLYTDEDGTLLESRFCEKELLQVVENLPVFSYLDDPTNPSYSFLPQLRDVLVERALKDPKSTDSAGYSIFKRIPIFLEELEEKLIEKISKARERFDNGDFPIPNRIKKCRTYPI* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0146 174 SUPERFAMILY L-aspartase-like 3 174 IPR008948 GO:0003824
Vvi11g0146 174 Pfam Aromatic amino acid lyase 4 51 IPR001106 -
Vvi11g0146 174 PANTHER HISTIDINE AMMONIA-LYASE 3 174 IPR001106 -
Vvi11g0146 174 Gene3D Fumarase/aspartase (Central domain) 3 174 - -
Vvi11g0146 174 Gene3D - 43 164 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0146 Vvi-Chr11 1327977 1328501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0146 3 174 Monolignol Biosynthesis Gene Families AT3G53260 52.907 6.00e-59 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0146 K10775 - vvi:100255939 315.849