Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0144 ATGTCTATGTCTATCAATGGTGTTTCTCCTTCATTTCAGAGCTTTCGGCCTCCCACTCTCCCTCTACCTGTAGAGGAAGAGAACCCCTTCTGCATATTGGGGGAATCTCGTCATGTACTGGCTCCACCGCACTGGAAGAAGGCTGCTGAGGCCCTACAGTGTGGTCATTTTGATGAGGTGTGCGCCATGGTGTCGCAGTTTGCACATGCGCAAACTGTGGATATTCAGGGCACGGCTCTCACAGTGGCCCAGGTCACTGCTCTTGCACGTGGGGATCATGTTAGGGTCGCTCTCGATGAGGCGGCGGCCCGAGGCCGCGTGACGAGGAGTGCTGATTGGGTGGCTGAGAACATCTCTCGGGGCACGGATACGTACGGGGTGACTACTGGCTTCGGTGCCACTTCCCATCGGCGGACCAACAAGACCGCTGATCTTCAGACCGAGCTGATTCGGTTTCTCAACGCTGGAGTGATCGGGAAGGAGACTCTTCCGGCGAGTTTCTCCAAGGCTGCTATGCTTGTTCGAGCGAATACTTTGATGCAAGGGTATTCGGGCATTCGGTGGGAGATACTTGAGGCCATGGCCAAGCTGATAAACCTCAATTTGATCCCTAAACTGCCTTTGAGGGGGACCATCACTGCTTCTGGGGACCTTGTGCCATTGTCTTATATTGCTGGAGTATTAACTGGGAGGCATAATTCCAAGGTTGTGACGCCTGAGGGGGAAGAAATCACGGCCATGGAAGCTCTGAAGAGAGCTGGAATTGAAGCTCCTTTTCAGCTGCAGGCGAAGGAAGGTCTGGCTCTTGTGAATGGGACTGCTGTTGGGTCAGCGGTGGCCGCAACGGTTTGTTTTGACGCCAACATCTTGGGGCTCCTTGCGGAGCCTAAACAAGACCGGTATGCGCTCAGAACTTCTCCCCAGTGGCTGGGGCCTCAGATTGAGGTGATTCGCATGGCAACACATTCAATTGAGAGGGAAATCAATTCAGTCAACGACAACCCTTTGATCGATGTCTCTCGGGACCTTGCTCTTCATGGAGGGAACTTCCAAGGGACCCCTATTGGTGTTTCCATGGACAATCTCCGGATTGCCATTGCAGCAATTGGGAAGCTCATGTTTGCTCAATTCTCCGAGCTGGTCTGCGACTATTATAATGGTGGGTTGCCTTCCAATTTGAGCGGCGGCCCCAACCCGAGCTTGGACTATGGCTTCAAAGGTGCTGAGATAGCCATGGCTGCCTACTGCTCCGAGCTTCAATACCTGGCGAACCTGGTCACAACACACGTGCAGAGCGCTGAACAACACAATCAGGATGTGAATTCTCTGGGATTAATCTCTGCAAGGAAGAGTGCTGAAGCAGTGGAGATCCTAAATCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAACCCTTTACACAGATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTCTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACTAACTCTGCAGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAATACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACGAAGCTCCTTAGTGGTGAAAACAAGGTGAGTCCCGGAGAGGATATAGAGAAGTTTAATCCGGAGTACTGGGGTTGGTTTGAGAAGCTGAGGTCTCCTTCTTCAGCTTCGAATGGGAGAGTGAATTGGGACCGGCTCTGA 1998 0.5065 MSMSINGVSPSFQSFRPPTLPLPVEEENPFCILGESRHVLAPPHWKKAAEALQCGHFDEVCAMVSQFAHAQTVDIQGTALTVAQVTALARGDHVRVALDEAAARGRVTRSADWVAENISRGTDTYGVTTGFGATSHRRTNKTADLQTELIRFLNAGVIGKETLPASFSKAAMLVRANTLMQGYSGIRWEILEAMAKLINLNLIPKLPLRGTITASGDLVPLSYIAGVLTGRHNSKVVTPEGEEITAMEALKRAGIEAPFQLQAKEGLALVNGTAVGSAVAATVCFDANILGLLAEPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANLVTTHVQSAEQHNQDVNSLGLISARKSAEAVEILNLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTNSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPIPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVSPGEDIEKFNPEYWGWFEKLRSPSSASNGRVNWDRL* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0144 665 PANTHER HISTIDINE AMMONIA-LYASE 293 637 IPR001106 -
Vvi11g0144 665 FunFam Phenylalanine ammonia-lyase 34 273 - -
Vvi11g0144 665 NCBIfam phenylalanine ammonia-lyase 295 637 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi11g0144 665 CDD PAL-HAL 80 476 IPR001106 -
Vvi11g0144 665 Gene3D - 34 273 IPR024083 -
Vvi11g0144 665 Gene3D Fumarase/aspartase (Central domain) 275 527 - -
Vvi11g0144 665 Gene3D Fumarase/aspartase (Central domain) 592 641 - -
Vvi11g0144 665 SUPERFAMILY L-aspartase-like 42 638 IPR008948 GO:0003824
Vvi11g0144 665 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 210 226 IPR022313 GO:0016841
Vvi11g0144 665 Pfam Aromatic amino acid lyase 296 487 IPR001106 -
Vvi11g0144 665 Pfam Aromatic amino acid lyase 80 293 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0144 Vvi-Chr11 1318994 1321292 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0144 32 637 Monolignol Biosynthesis Gene Families AT3G10340 52.437 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0144 K10775 - vvi:100255939 717.613