Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0143 ATGATTAATGATCTTCCAACAATATTTGAGGTTGTGACCGGAGCTGCAAAGAAACAAGTGAAGGAGAAGTCATCAGTTTCAAACCATAGCAGCAACAAATCCAAGTCAAAATCAAAAGTGAGAGGATCTGAATCAGCTAAATATTCAAAGGTTGGGCAGCCAAAGGATGAGGAAGAAGGTTTGGATGAGGTAGATGAGGAGGAGCATGGAGATACCTTGTGTGGTGCTTGTGGAGAGAACTATGCTTCAGATGAGTTCTGGATATGCTGCGACATATGTGAGAAATGGTTCCACGGAAGTGTGTGA 306 0.4248 MINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSKSKVRGSESAKYSKVGQPKDEEEGLDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGSV* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0143 101 MobiDBLite consensus disorder prediction 16 68 - -
Vvi11g0143 101 PANTHER CPG BINDING PROTEIN 1 100 IPR045104 GO:0006355|GO:0042393
Vvi11g0143 101 SUPERFAMILY FYVE/PHD zinc finger 65 99 IPR011011 -
Vvi11g0143 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 101 IPR013083 -
Vvi11g0143 101 MobiDBLite consensus disorder prediction 37 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0143 Vvi-Chr11 1315769 1316459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0143 1 99 Alfin-like Transcription Factor Family AT3G42790 67.677 2.52e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0143 - - vvi:100852794 165.622