Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0131 ATGACAAATGTGAATTCTCTGGGATTAATCTCTGCAAGGACGAGTGCTGAAGCAGTGGAGATCCTAAAGCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGGAAAACCCTTTACACAGATGAAGATGAAACCTTGTTAGAATCTCGTTTATGCGAGAAAGAACTCCAGAGGTTTTGGGGAGAGGAAGATGGAGACAAGGCTATCGGAGGCGGCAATGAAGGGAAGCGTAGATTCTCTAATGAAAATTCTTCAAGAAAATCCGCTAATTCTCGACAGAACCATTGTCTCTTGCATCTCCGAGACGCCTCTTCCATGCTCGGTCTCCTTCATTTCGTCAAAGAGCTTCTCACACTGAAACCCGAGCTTGCTGCCGAGTTGGATTTCCACGGCGCGGCGCCTCTTCACCTGGCGGCGGCTAAAGGCCACGCGGAGGTGGAGAGGCAGCTGCTGCTGGCAGATCCTGAGATCTGTACGGTGCGAAATGAAGACGGGAGGACGCCTCTCCACGTGGCGGCGTTCAAAGGGCGAGCCGAGGTTGTCAGCGAGTTGGCCCGGGTCAAACCGGTGGCGACTAGGGTGGTGACGGATCGGGGGGAGACGGTTTTGCACCTGTGCGTGATGCAGAATCGGTTGGAGGCGTTGAGGGCGTTGGTAGAAGCGATGGGTGGGGGGGGGACACGATGGTGA 762 0.5328 MTNVNSLGLISARTSAEAVEILKLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDETLLESRLCEKELQRFWGEEDGDKAIGGGNEGKRRFSNENSSRKSANSRQNHCLLHLRDASSMLGLLHFVKELLTLKPELAAELDFHGAAPLHLAAAKGHAEVERQLLLADPEICTVRNEDGRTPLHVAAFKGRAEVVSELARVKPVATRVVTDRGETVLHLCVMQNRLEALRALVEAMGGGGTRW* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0131 253 PANTHER HISTIDINE AMMONIA-LYASE 3 82 IPR001106 -
Vvi11g0131 253 Gene3D Fumarase/aspartase (Central domain) 3 42 - -
Vvi11g0131 253 SUPERFAMILY L-aspartase-like 3 84 IPR008948 GO:0003824
Vvi11g0131 253 MobiDBLite consensus disorder prediction 87 107 - -
Vvi11g0131 253 MobiDBLite consensus disorder prediction 87 114 - -
Vvi11g0131 253 Gene3D - 43 85 IPR023144 -
Vvi11g0131 253 SMART ANK_2a 154 183 IPR002110 GO:0005515
Vvi11g0131 253 SMART ANK_2a 222 253 IPR002110 GO:0005515
Vvi11g0131 253 SMART ANK_2a 188 217 IPR002110 GO:0005515
Vvi11g0131 253 Pfam Ankyrin repeats (3 copies) 132 209 IPR002110 GO:0005515
Vvi11g0131 253 Gene3D - 121 248 IPR036770 -
Vvi11g0131 253 ProSiteProfiles Ankyrin repeat region circular profile. 154 175 - -
Vvi11g0131 253 ProSiteProfiles Ankyrin repeat profile. 154 186 IPR002110 GO:0005515
Vvi11g0131 253 ProSiteProfiles Ankyrin repeat region circular profile. 188 208 - -
Vvi11g0131 253 Pfam Aromatic amino acid lyase 4 51 IPR001106 -
Vvi11g0131 253 ProSiteProfiles Ankyrin repeat profile. 188 208 IPR002110 GO:0005515
Vvi11g0131 253 SUPERFAMILY Ankyrin repeat 128 244 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0131 Vvi-Chr11 1218185 1219922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0131 3 80 Monolignol Biosynthesis Gene Families AT2G37040 62.821 4.99e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0131 - - qsu:112023531 171.014