Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0129 ATGCCACTCATCCCATTCAACCCATCAACCCATCTGCAATCCACACACACCTCTCCAGCTCTCCTCTCTCCGCTAGAGTTGTTTTTGGACTCAATGTCTATGTCTATCAATGGTGTTTCTCCTTCATTTCAGAGCTTTCGGCCTCCCACTCTCCCTCTACCTGTAGAGGAAGAGAACCCCTTCTCCATATTGGGGGAGTCTCGTCATGTACTGGCTCCACCGCACTGGAAGAAGGCTGCTGAGGCCCTACAGTGTGGTCATTTTGATGAGGTGTGCGCCATGGTGTCGCAGTTTGCACATGCGCAAACTGTGGATATTCAGGGCACGGCTCTCACAGTGGCCCAGGTCACTGCTCTTGCACGTGGGGATCATGTTAGGGTCGCTCTCGATGAGGCGGTGGCCCGAGGCCGCGTGACGAGGAGTGCTGATTGGGTGGCTGAGAACATCTCTCGGGGCACGGACACGTACGGGGTGACTACTGGCTTCGGTGCCACTTCCCATCGGCGGACCAACAAGACCGCTGACCTTCAGACCGAGCTGATTCGGTTTCTCAACGCTGGAGTGATCGGGAAGGAGACTCTTCCGGCGAGTTTTTCCAAGGCTGCTATGCTTGTCCGAGCGAATACTCTGATGCAAGGGTATTCGGGTATTCGGTGGGAGATACTTGAGGCCATGGCCAAGCTGATAAACCTCAATTTGATCCCTAAACTGCCTTTGAGGGGGACCATCACTGCTTCTGGGGACCTTGTGCCCTTATCTTATATTGCTGGAGTATTAACTGGGAGGCATAATTCCAAGGTTGTGACGCCTGAGGGGGAAGAAATCACGGCCATGGAAGCTCTGAAGAGAGCTGGCATTGAAGCCCCTTTTCAGCTGCAGGCGAAGGAAGGTCTGGCTCTTGTGAATGGGACTGCTGTTGGGTCAGCGGTGGCCGCAACGGTTTGTTTTGATGCCAACATCTTGGGGCTCCTTGCGGAGGTTCTGTCTGCCTTGTTCTGTGAAGTGATGAATGGCAAGCCTGAGTTTACGGATCCATTGACTCATGAGCTGAAACACCATCCTGGCCAGATTGAATCAGCTGCTATAATGGAATTTCTTCTTGATGAAAGTGACTACATGAAAGCAGCAAAGCTTCGTCAAGAGAAGGATGTGTTGATGAAGCCTAAACAAGACCGGTATGCGCTCAGAACTTCTCCCCAGTGGCTGGGGCCTCAGATTGAGGTGATTCGCATGGCAACACATGCAATTGAGAGGGAAATCAATTCTGTCAACGACAACCCTTTGATCGATGTCTCTCGGGACCTTGCTCTTCATGGAGGGAACTTCCAAGGGACCCCTATTGGTGTTTCCATGGACAATCTCCGGATTGCCATTGCAGCAATTGGGAAGCTCATGTTTGCTCAATTCTCGGAACTGGTCTGTGACTATTATAATGGTGGGTTGCCTTCCAATTTGAGTGGCGGCCCCAACCCGAGCTTGGACTATGGCTTCAAAGGTGCTGAGATAGCCATGGCTGCCTACTGCTCCGAGCTTCAATACCTGGCGAACCCGGTCACAACACACGTGCAGAGCGCTGAACAACACAATCAGGATGTGAATTCTCTGGGATTAATCTCTGCAAGGAAGAGTGCTGAAGCAGTGGAGATCCTAAAGCTCATGTCTGCAACTTACATGGTGGCACTTTGCCAGGCAGTTGACCTGAGACACCTAGAAGAAAACATGAGGGAAGTAGTGAAACATCTCATCACCCAAGTAGCAAGAAAAACCCTTTACACAGATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTTTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACCGACTCTGCGGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAGTACCAAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACCAAGCTCCTTAGTGGTGAAAACAAGGTGAATGAAGATGGGACGCTGCTAGAATCTCGTTTCTGCGAGAAAGAACTCCAGCAGGTCGTCGAAAACTTGCCAGTCTTCTCCTATATCGACGATCCCACTAATCCTTCATACACTTTTTTGCCTCAACTCCGAGATGTACTAGTTGAAAGAGCTCTCAAAGACCCCAAATCCACCGACTCTGCGGGCTATTCCATTTTCAAGCGCATCCCCATATTTCAAGAGGAGCTGAAGGAGAGACTGATTGAGGAGATATCAAAAGCAAGAGAAAGGTTTGATAATGGAGATTTCCCAATACCGAACAGAATCAAGAAATGCAGGACTTACCCCATATACGGATTTGTGAGGAAAGAAGTGGGAACCAAGCTCCTTAGTGGTGAAAACAAGGTGAGTCCCGGAGAGGATATAGAGAAGGTTTATGAGGCGATCAATGATGGGAAGTTGGGAGATGTGCTGATGAAGTGCTTGTCATTTTGGAGAGGCACGTCGGGGCCTTTCACGCCGAGGCCTAGTGGGTTGTCTTCTCCGGCGCAGTTTAATCCGGAGTATTGGGGTTGGTTTGAGAAGCTGAGGTCTCCTTCTTCAGCTTCGAATGGGAGAGTGAATTGGGACCAGCTCTAA 2781 0.4962 MPLIPFNPSTHLQSTHTSPALLSPLELFLDSMSMSINGVSPSFQSFRPPTLPLPVEEENPFSILGESRHVLAPPHWKKAAEALQCGHFDEVCAMVSQFAHAQTVDIQGTALTVAQVTALARGDHVRVALDEAVARGRVTRSADWVAENISRGTDTYGVTTGFGATSHRRTNKTADLQTELIRFLNAGVIGKETLPASFSKAAMLVRANTLMQGYSGIRWEILEAMAKLINLNLIPKLPLRGTITASGDLVPLSYIAGVLTGRHNSKVVTPEGEEITAMEALKRAGIEAPFQLQAKEGLALVNGTAVGSAVAATVCFDANILGLLAEVLSALFCEVMNGKPEFTDPLTHELKHHPGQIESAAIMEFLLDESDYMKAAKLRQEKDVLMKPKQDRYALRTSPQWLGPQIEVIRMATHAIEREINSVNDNPLIDVSRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDYYNGGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAVEILKLMSATYMVALCQAVDLRHLEENMREVVKHLITQVARKTLYTDEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTDSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPVPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVNEDGTLLESRFCEKELQQVVENLPVFSYIDDPTNPSYTFLPQLRDVLVERALKDPKSTDSAGYSIFKRIPIFQEELKERLIEEISKARERFDNGDFPIPNRIKKCRTYPIYGFVRKEVGTKLLSGENKVSPGEDIEKVYEAINDGKLGDVLMKCLSFWRGTSGPFTPRPSGLSSPAQFNPEYWGWFEKLRSPSSASNGRVNWDQL* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0129 926 Gene3D Fumarase/aspartase (Central domain) 819 889 - -
Vvi11g0129 926 PANTHER HISTIDINE AMMONIA-LYASE 721 886 IPR001106 -
Vvi11g0129 926 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 241 257 IPR022313 GO:0016841
Vvi11g0129 926 Gene3D - 571 692 IPR023144 -
Vvi11g0129 926 Gene3D Fumarase/aspartase (Central domain) 305 721 - -
Vvi11g0129 926 CDD PAL-HAL 111 568 IPR001106 -
Vvi11g0129 926 FunFam Phenylalanine ammonia-lyase 65 304 - -
Vvi11g0129 926 Gene3D - 65 304 IPR024083 -
Vvi11g0129 926 SUPERFAMILY L-aspartase-like 73 720 IPR008948 GO:0003824
Vvi11g0129 926 NCBIfam phenylalanine ammonia-lyase 74 720 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi11g0129 926 Pfam Aromatic amino acid lyase 111 579 IPR001106 -
Vvi11g0129 926 SUPERFAMILY L-aspartase-like 721 886 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0129 Vvi-Chr11 1209946 1213113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0129 724 886 Monolignol Biosynthesis Gene Families AT3G53260 50.307 7.68e-46 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0129 K10775 - vvi:100255939 1397.49