Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0127 ATGGATGGTGGACCGCAGTACAATCCTCGAACTGTAGAAGAGGTTTTCAGGGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTGATGTTGAAGAGTTCTACCAGCAATGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTCCCTAATGAACTGTGGGAAGTTAATTTACCTGCTGAAGAGGTGCCGCCTGAGCTCCCTGAACCTGCCTTAGGTATTAATTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGTTGTCTCTGGTTGCTGTGCACAGTGATGCTTGGTTACTTGCTGTGGCCTTCTATTTTGGTGCCAGGTTTGGTTTTGATAAAGCTGACAGGAAACGTCTTTTCAATATGATTAATGATCTTCCAACAATATTTGAGGTTGTGACTGGAGCTGCAAAGAAACAAGTAAAGGAGAAGTCATCAGTTTCGAACCATAGTAGCAACAAATCCAAGTCAAACTCGAAAGTGAGAGGATCTGAATCAGCTAAATATTTAAAGGGTGGGCAGCCAAAGGATGAGGAAGAAGGATTGGATGAGGTAGATGAGGAGGAGCATGGGGATACCTTGTGTGGTGCTTGCGGAGAGAACTATGCTTCAGATGAATTCTGGATATGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACCCCTGCGAGGGCTGAGCACATCAAACAGTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAGGCCTTGA 759 0.4572 MDGGPQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSNSKVRGSESAKYLKGGQPKDEEEGLDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0127 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vvi11g0127 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Vvi11g0127 252 FunFam PHD finger alfin-like protein 191 247 - -
Vvi11g0127 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Vvi11g0127 252 SMART PHD_3 198 246 IPR001965 -
Vvi11g0127 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Vvi11g0127 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Vvi11g0127 252 Pfam PHD-finger 199 248 IPR019787 -
Vvi11g0127 252 SUPERFAMILY FYVE/PHD zinc finger 190 249 IPR011011 -
Vvi11g0127 252 CDD PHD_AL_plant 198 248 IPR044104 -
Vvi11g0127 252 MobiDBLite consensus disorder prediction 150 168 - -
Vvi11g0127 252 MobiDBLite consensus disorder prediction 146 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0127 Vvi-Chr11 1192382 1198605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0127 1 251 Alfin-like Transcription Factor Family AT3G42790 78.175 3.91e-130 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vvi11g0127 Alfin 5.8e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0127 - - vvi:100852794 503.442