Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0125 ATGGCTATACGAATCGGAAACTTGCCCAAAAGAAGTTTTGATCAAAGTTCTGTTCATTCTATGCCCCATTTCACTGTTAATTGCCAAGCTTGGTGGAATTCAAATGAACAGCAGCTTCCAGAGTCTTTTTCAAAAAATCTAAGCTTGAAAGTTGAATCTCCGCCCCAACTCTATCAAAACATGAAGCAATTAGGTCTTCAACTACAAGACCAGGACTCATCCTCAAGTCAATCAACTGGTCAGTCTCACCAAGAAGTGTCTGCTATCGGAAGGACCAATTCTCAAGATCAATGTATTTCATCTGAATCTGTTCATGGTGAAAGTTGCGAGAAGCGTGTGGAAGGTCAAAGTCAAATGAAGCCAGTTTTCTTTATGGCTAATCCAGATGTTGTCTTCAATCCTTCACAAGTTGACTATGGCCATTCTGTGACTCATGTTGCATATCCTTATGCTGATCCTTACCATGGGGGGTTAGTGGCTGCATATGGTCCACATGCTGTTATTCAGCCCCAGCTGGTGGGGATAGCACCTACCAGAGTCCCACTGCCCTTTGATATTGCAGAGGATGGACCTATTTTTGTCAATGCAAAACAGTATCATGGAATTCTCAGGAGGAGGCAGTCACGAGCAAAGATGGAGGCCCAGAACAAACTTGTCAAAGCCCGAAAGCCATATCTGCACGAGTCTCGGCATCTTCATGCCCTAAATAGGGTTAGAGGATCTGGTGGACGCTTCCTCAGCACGAAAAAGCTCCAAGAACCCGACTCAACTTCCAATGCTGGCTGTCATAGTGTATCTGGCTCTGGTCATTTTCACCAGAAGGGAGACACAACTGAGTATGAAGTCCATCAGTCTGATACTGGCAAATTTGTTGCTTCAACTACATCCAGCTCTGATGTCACCAGTGTCTCTAACAGTGATGTCCTTTTCAGGCAGCCGGAGCACAGGTTCTCAGGCATGTCTCCCCACATGGGTGGAGCCATGCAAGGTGGTGGCGGTGGGACTTATGGGCAATGGAGTCCTGCTCCTGGTTGTCCGGTGAGAAGTCGATAG 1053 0.4634 MAIRIGNLPKRSFDQSSVHSMPHFTVNCQAWWNSNEQQLPESFSKNLSLKVESPPQLYQNMKQLGLQLQDQDSSSSQSTGQSHQEVSAIGRTNSQDQCISSESVHGESCEKRVEGQSQMKPVFFMANPDVVFNPSQVDYGHSVTHVAYPYADPYHGGLVAAYGPHAVIQPQLVGIAPTRVPLPFDIAEDGPIFVNAKQYHGILRRRQSRAKMEAQNKLVKARKPYLHESRHLHALNRVRGSGGRFLSTKKLQEPDSTSNAGCHSVSGSGHFHQKGDTTEYEVHQSDTGKFVASTTSSSDVTSVSNSDVLFRQPEHRFSGMSPHMGGAMQGGGGGTYGQWSPAPGCPVRSR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0125 350 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 308 IPR001289 GO:0003700|GO:0006355
Vvi11g0125 350 MobiDBLite consensus disorder prediction 67 104 - -
Vvi11g0125 350 MobiDBLite consensus disorder prediction 248 285 - -
Vvi11g0125 350 Gene3D - 188 250 - -
Vvi11g0125 350 MobiDBLite consensus disorder prediction 316 350 - -
Vvi11g0125 350 PRINTS CCAAT-binding transcription factor subunit B signature 191 213 IPR001289 GO:0003700|GO:0006355
Vvi11g0125 350 PRINTS CCAAT-binding transcription factor subunit B signature 222 245 IPR001289 GO:0003700|GO:0006355
Vvi11g0125 350 SMART cbf3 187 248 IPR001289 GO:0003700|GO:0006355
Vvi11g0125 350 MobiDBLite consensus disorder prediction 67 112 - -
Vvi11g0125 350 MobiDBLite consensus disorder prediction 250 273 - -
Vvi11g0125 350 ProSiteProfiles NF-YA/HAP2 family profile. 188 248 IPR001289 GO:0003700|GO:0006355
Vvi11g0125 350 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 191 245 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0125 Vvi-Chr11 1178777 1181489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0125 10 318 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.405 9.24e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi11g0125 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0125 K08064 - vvi:100249054 668.692