Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0123 ATGCTGACGTGCATAACTCGTTCGAAGCAACTCAGCGACGAGTCGTTGAAACAGACGGAGGAGGCAAACGCCTCGAACACGCCTGGGACCAAGCAGCAGTCGATCAAAGCTCTCACATGTCAGATCAAGGACATGGCGTTGAAAGCGACAGGAGCGTATCGGAACTGTAATCCGTGTTCCGCTTCAGTGCAGCATCAGAGCAGGAGTTACGCAGAGTCGGACTCGGCTTCGGCGTCGGAGAGGTTCAGATGGTCGTACCGTCGGACGGGGAGTTCGAGCTCGACGACGCCACGTTGGGGGAAGGAGATGGAGGCGAGACTGAAGGGGCTTTCGAGCGGCGAAGGCACGCCGGCATCGGCGAGTGGCCGGCGAGTCGAATCGGTCGTATTCGTTGAGGAGAATGAGCCGAAAGAGTGGGTGGCCCAGGTCGAGCCCGGCGTGCTCATCACCTTCGTCTCCCTTCCCCGTGGAGGGAACGATCTCAAGCGCATTCGGTTCAGTCGAGAAATGTTTAACAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGAGCTCAAAAATGGAATCAGCAGAAGACAGCCCTGTTACGCCTCCATTGACCAAAGAACGCCTGCCTCGTAACCTGTATCGTCCCTCAGGACTGGGAATGGGCTACTCATCCTCGGATTCACTTGACCATCACCCAATGCAGCCGCGTCATTTCTATGACTCAGGTGGTCTCACTTCAACCCCAAAACTCTCCAGCATAAGTGGGGCAAAGACAGAAACATCATCCATGGATGCCTCTATAAGGACTAGTTCATCTAGGGAAGCTGATCGCTCTGGAGAACTATCTGTTAGCAATGCCAGCGACTTGGAGACTGAATGGGTTGAAGAGGATGAGCCAGGTGTTTACATTACCATCAGAGCGCTTCCAGGTGGTACACGGGAGCTTAGACGTGTCAGATTCAGCCGAGAACGGTTTGGAGAGATGCATGCTAGACTTTGGTGGGAGGAGAACCGGGCAAGAATACATGAACAGTACTTGTGA 1116 0.5341 MLTCITRSKQLSDESLKQTEEANASNTPGTKQQSIKALTCQIKDMALKATGAYRNCNPCSASVQHQSRSYAESDSASASERFRWSYRRTGSSSSTTPRWGKEMEARLKGLSSGEGTPASASGRRVESVVFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDRVMELYNVQRFNRQAFPLPTPPRSEDESSKMESAEDSPVTPPLTKERLPRNLYRPSGLGMGYSSSDSLDHHPMQPRHFYDSGGLTSTPKLSSISGAKTETSSMDASIRTSSSREADRSGELSVSNASDLETEWVEEDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRARIHEQYL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0123 371 MobiDBLite consensus disorder prediction 265 294 - -
Vvi11g0123 371 Pfam Transcription factor regulating root and shoot growth via Pin3 137 191 IPR013591 -
Vvi11g0123 371 Pfam Transcription factor regulating root and shoot growth via Pin3 315 370 IPR013591 -
Vvi11g0123 371 MobiDBLite consensus disorder prediction 200 311 - -
Vvi11g0123 371 ProSiteProfiles BRX domain profile. 316 371 IPR013591 -
Vvi11g0123 371 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 371 IPR044532 -
Vvi11g0123 371 Pfam Transcription factor BRX N-terminal domain 23 59 IPR027988 -
Vvi11g0123 371 ProSiteProfiles BRX domain profile. 137 192 IPR013591 -
Vvi11g0123 371 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0123 Vvi-Chr11 1159231 1163176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0123 1 371 Major Intrinsic Protein MIP AT1G31880 46.667 2.90e-102 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0123 - - vvi:100250851 719.924