Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0120 ATGTTTGAGATTCCAAGCCCCTTTCTGCCACCACCACCACCTCCGCCGGTCAAACACCAGCTGCCCATGTTGTACTACGGCCTCATCGTGGTCGGCACTGCCGCTTTTGTGCTTGCTCTGTACAATCTTATTGTGATCAGATGGTGCAGCAACAACCGGAGTAGATCACGGAGGAGAGAACATCATTTCTTTGATCCCAGACCGAGTCAGAGTTTTGAGAACATGAATTTGGGATTGGTGTCGAGTTTCAAGTACAGGAAAGAGGGGGTGGCTCAGGAGCAAGCGGCGGAGTATGAATGTGCGGTTTGTTTATCGGTTTTTGAGGAGGGGGAAGATGTTAGGAAGCTGCCAAAGTGTAAGCACTCCTTTCATGCTCCTTGTATAGATATGTGGCTCTACTCCCACTCTGATTGCCCACTCTGTCGCGCGAGGGTGGAGCCTGCTGTTGTTCATTGCCAGGCTGAGGCTGAGGCTGAGGCTGTGACTCAACCGGAGAATCCGAGAGGTGGGTTGAGAGATTCAGGCGAGTCAGTTTGA 537 0.5177 MFEIPSPFLPPPPPPPVKHQLPMLYYGLIVVGTAAFVLALYNLIVIRWCSNNRSRSRRREHHFFDPRPSQSFENMNLGLVSSFKYRKEGVAQEQAAEYECAVCLSVFEEGEDVRKLPKCKHSFHAPCIDMWLYSHSDCPLCRARVEPAVVHCQAEAEAEAVTQPENPRGGLRDSGESV* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0120 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Vvi11g0120 178 CDD RING-H2_EL5-like 99 142 - -
Vvi11g0120 178 SUPERFAMILY RING/U-box 94 148 - -
Vvi11g0120 178 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vvi11g0120 178 Pfam Ring finger domain 99 142 IPR001841 -
Vvi11g0120 178 SMART ring_2 100 141 IPR001841 -
Vvi11g0120 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 146 IPR044675 -
Vvi11g0120 178 MobiDBLite consensus disorder prediction 157 178 - -
Vvi11g0120 178 FunFam RING-H2 finger protein ATL1 60 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0120 Vvi-Chr11 1146136 1146672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0120 28 145 C3H Transcription Factor Family AT5G17600 38.583 1.51e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0120 - - vvi:104880623 328.561