Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0119 ATGGAAAGTGGAAGAGAGGCGGCACGCAAGACAGGTAGCAATGAAAATGAAGTCGTGGTTACGATTTCGAGTAGTGAGGAAAGCACGGATGCTAAAGCTTCTGCGGCAACCGAAGATGGCTTCAAATCGTTTTCTAAAGATTCGCAAGCTTCGATTGAGCTGGAGAGGCTCAAATCCAGGGTCCAAGTGACCCCAAAGACCACCCCATCTTCTCCGGACACGCCCAGAAGTCCGAGCGCGAGCAAGCCCCCAAAAGTCCCCACGGAGTCGGTGGTTCGACGGCGGTCCCTGGGGAGGTCGGCATATTCGATACCCAAATCGAGATTGCTGGAGCCTTCATGTCCTATTGAAACTTCTGTTGAAGAGAATACCCGGTTGTTGCCTTCGAGTTCGCTTAAAACTAACCGTGCTTCTCCAATTCATAGCTCAACTGCTACTACTCCTAGAGACAATGTGAAAACAGCTCCGGTGACTCCACAAACACCCGGTGGAGAGGACGAAGAAGAAGAAGAAGACGAGGAGGTTTATAAGACATCGTATTTGCCAGAAACGGAAAAGAAAAGTAAGAAATTGAGGTTTGTAGTTTGGATTGAGTGGGTAGCGTTTGTGTGTATTATGGGGTGCTTGATTGCTAGCTTAACTATAGATAGATTGCTGCATACTATGATTTGGAGTTTGGAAATTTGGAAATGGTCTGTGCTGGTATTGGTGATATTCTGTGGGAGAGTGGTCACAGAACGGTGTATTAATATCGTAGTCTTCATGATTGAAAAGAATTACTTGTTTAGACAGAAGGTTTTGTACTTTGTTTTTGGGTTGAAGAAGAGTGTGCTGGTCTTCATTTGGTTGGGTTTGATTCTTCTAGCTTGGGGCCTATTGATCGACAGTGGGGTGAAGCGATCAAGGAAGACCACCAGGATTCTGAATTATGTGACGAGAGCCCTTGCTTCTTGTCTTGTTGGGGCTGTTCTATGGCTGGCAAAGGCCCTGTTGATAAAGATACTTGCTTCTTCTTTCCATGTCACAAGATTCTTTGACCGGATTCAAGAATCCCTATTTCATCAGTATGTTCTCCAGACCCTTTCAAAGCCTCCTTCCATGGAGACTACAGAAATGGTTGGGAGAGGAAATAGCGCTCAGTTGAGTTTCAGGAGTGAGATGAAACAAAAAGGAGGGAAGAAAGAAGAGGTTGTTGATGTAGGGAAGCTTTATAAAATAGACCAAGAGAAGGTTTCTGCTTGGACCATGAAAGGTTTGATTGACGTGATAAGGGGTTCCAGGTTGACTACAATATCGAATGTGCTTGATGACAGTGTTGATGATGAGGGAGGCGAACATAAAGATAAGGAGATTGCTAATGAGTGGGAAGCAAGGACTACAGCTGTTCAGATTTTTGAGAATGTAGCCAAGAGTGATCCCAAATATATCCATGAGAAGGACCTCTGGTGCTTCATGAAAAAGCAGGACGTAGATAATTTGCTTCCATTATTTGAAGGAGCATCAGAAACTCGAAAGATTAAGAGATCCTCTTTTAAGAAGTGGGTGGTGAAGGTCTACAGTGAACGCAAATCACTGGCACTTTCTTTAAATGATGCTAAAACAGCCATAGAGGAACTGAATAAAATTACTTCAGGGGTTACTCTTATTGTTATCATCATTGTGTGGTTACTCTTGATGGGATTAGTGACGACCAAAGTACTCATCCTCATTTCATCGCAGCTTTTACTCTCAGCGTTTATGTTTGGCAACACCTGCAAGACTGTATTTGAAGCCATGATATTTGTATTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATCGATGGAGTGCAGATGACTGTTGAAGAGGTGAACATTTTGACGACAATCTTCCTGAGATATGACAATGAAAAGATATTCTATCCAAATTCAGTTTTGGCTACCAAACCCATCAGCAACTTTTACAGGAGCCCGGAAATGGGGGGTGACTCTGTGGAGTTTGCTGTTGATTTTTCCACTTCAATGGAGACCATCGCTGCTCTTAAAGATGGAATAAAAACGTACTTGGAGAGCAAGCCTCAACACTGGCGTCCTGGCCACAGTGTGTTGGTGAAGGATATTGTTGATGTGAACCAGATGAATATGGGTCTTTATGTCACCCACACCATAAACTTTCAGAACTATGGGGACAAGAGCAGCCGCAGATCTGAACTAGTCATAGAGCTGAAGAAAATCTTTGAAGAGCTTAATATTAAATATCATCTTCTGCCTCAGGAAGTTCATGTAAGAAGTGTTGACTCAGCACCACCAGTGTTTCCAACTACAATGCGATGA 2319 0.4355 MESGREAARKTGSNENEVVVTISSSEESTDAKASAATEDGFKSFSKDSQASIELERLKSRVQVTPKTTPSSPDTPRSPSASKPPKVPTESVVRRRSLGRSAYSIPKSRLLEPSCPIETSVEENTRLLPSSSLKTNRASPIHSSTATTPRDNVKTAPVTPQTPGGEDEEEEEDEEVYKTSYLPETEKKSKKLRFVVWIEWVAFVCIMGCLIASLTIDRLLHTMIWSLEIWKWSVLVLVIFCGRVVTERCINIVVFMIEKNYLFRQKVLYFVFGLKKSVLVFIWLGLILLAWGLLIDSGVKRSRKTTRILNYVTRALASCLVGAVLWLAKALLIKILASSFHVTRFFDRIQESLFHQYVLQTLSKPPSMETTEMVGRGNSAQLSFRSEMKQKGGKKEEVVDVGKLYKIDQEKVSAWTMKGLIDVIRGSRLTTISNVLDDSVDDEGGEHKDKEIANEWEARTTAVQIFENVAKSDPKYIHEKDLWCFMKKQDVDNLLPLFEGASETRKIKRSSFKKWVVKVYSERKSLALSLNDAKTAIEELNKITSGVTLIVIIIVWLLLMGLVTTKVLILISSQLLLSAFMFGNTCKTVFEAMIFVFVMHPFDVGDRCVIDGVQMTVEEVNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMGGDSVEFAVDFSTSMETIAALKDGIKTYLESKPQHWRPGHSVLVKDIVDVNQMNMGLYVTHTINFQNYGDKSSRRSELVIELKKIFEELNIKYHLLPQEVHVRSVDSAPPVFPTTMR* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0119 772 MobiDBLite consensus disorder prediction 14 31 - -
Vvi11g0119 772 Gene3D - 600 649 IPR023408 -
Vvi11g0119 772 MobiDBLite consensus disorder prediction 120 177 - -
Vvi11g0119 772 PIRSF Memb_At2g17000 2 771 IPR016688 -
Vvi11g0119 772 MobiDBLite consensus disorder prediction 61 75 - -
Vvi11g0119 772 Pfam Mechanosensitive ion channel 540 747 IPR006685 GO:0016020|GO:0055085
Vvi11g0119 772 FunFam Predicted mechanosensitive ion channel 600 649 - -
Vvi11g0119 772 MobiDBLite consensus disorder prediction 120 158 - -
Vvi11g0119 772 SUPERFAMILY Sm-like ribonucleoproteins 590 649 IPR010920 -
Vvi11g0119 772 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 7 765 IPR016688 -
Vvi11g0119 772 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0119 Vvi-Chr11 1117660 1129696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0119 48 757 Mechanosensitive Ion Channel Family AT5G12080 49.231 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0119 K22048 - vvi:100257841 1420.22