Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0117 ATGCCGGTGAATCTGACGCCGAACGCGATTGCGGCAATCAACGGTGGAGATGTGAATTCAAAGCCGCTCGTGCAGGTTCTGGACATCAAGCTCATTGGAAACTCGCAGGAGCGGTACCGATTTCTGCTTTCCGATGCCGTGGCGACTCAGCAGGCCATGCTGGCGACTCAACTCAATGACCGAGTCAAGAGCGGACAAGTTCGCAAAGGATCTGTAATTCAGTTGATTGATTATATCTGCAGCGTTGTTCAAAATCGCAAGATTATTGTTGTGTTGAACATGGAAACTATAATACCAGAATGTGAAATAATTGGAAACCCGAAAATGAATACTGAATCTCATTCAACAGCTCAGAAAGAGTTTCCCGGTGGCAATCGTGCAAGATCAGTGGGTGTTACTAATAATAATTTGAGTGTCCAAAATGGTGGTAATAAGATGCCGAGTTTTCGACCTTCTGTTCAACCTCCTTTCCAACCGCCTCCAAATTACAAAAGTCATGGCACAATTTTGAAGAATGAGGCACCAGCACGGATAATTCCGATTGCTGCTTTGAATCCTTATCAGGGGCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGGAGATACAACAATGCCAGGGGAGATGGGAAGGTTTTCTCATTTGACCTCCTTGATTCTGATGGAGGGGAGATTCGAGTGACCTGCTTTAATGCAGTTGTTGATCGGTTTTATGATACTATTGAGGTTGGGAAAGTTTACTTGATATCGAAGGGTAGCTTAAAACCTGCACAGAAGAACTTCAACCACCTGAAGAATGAATGGGAAATATTTTTGGAAGCAAGCTCAAGTGTGGAGCTGTGCCCAGATGAAGATGGCTCAATTCCAAAACAGCAGTTCTCCTTTAGACCAATCAGTGAAATTGAGAATGTTGAAAACAATTCCATACTTGATGTTATTGGCATTGTAATATCAGTGAATCCTTCAGTCCCCATCTTGAGAAAGAATGGTATGGAAACTCAGCGAAGAATTGTAAATCTAAAGGATGGCTCTGGTCGGAGTATTGAGCTCACCATGTGGGGGGAATTCTGCAACAGGGAAGGTCATCAGCTGCAGGAGATGATTGATTCTGGATCTTTCCCAGTTTTGGCTGTGAAATCCGGAAAGGTTAACGACTTCAGTGGGAAATCTGTAGGCACAATCTCTGCCACACAGCTCTTCATAAATCCAGACTTTACAGAGGCTTGTAACTTGAGAGAGTGGTTTGATCGAGGGGGAAAGAATGCTGCTTCTCAGTCCATCTCTAGAGATATCATGCCTGCAGGATCTAGGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGTCTTGGAAGATCAGATAAACCAGACTGGGTCACAGTGAAGGCAACCATATCATTCATTAAAACAGACACTTTCTGTTATGCGGCTTGCCCATTGATGATTGGAGATAGACAGTGTAATAAGAAAGTGACAAGGTCAGGGAACACAAGATGGCAATGTGACAGGTGCAATCAAGAATTCGAGGACTGTGATTATCGATATCTTCTTCAAGCTCAAGTACAAGACCATACAGGATTGACTTGGGTGACAGCTTTCCAGGAAGCCGGTGAAGAGATCTTGGGTTGCTCAGCAAAAGAGCTGTACTTGTTGAAATACGAGGAGGAGGATGATTTCCGGTTTGGAGAAATAATCCGGAGCAGACTCCTTAACCAATTTTTGTTCAGACTTAAGATCAAAGAGGAAATGTATGGTGAAGAACAGAGGGTGAAGATCACTGTTGTCAAAGCAGACAAGGTGAACTATACTTCTGAAAGTAGGCATCTGCTTGATCTGATCTCAAAGTGCCCTTAA 1869 0.4377 MPVNLTPNAIAAINGGDVNSKPLVQVLDIKLIGNSQERYRFLLSDAVATQQAMLATQLNDRVKSGQVRKGSVIQLIDYICSVVQNRKIIVVLNMETIIPECEIIGNPKMNTESHSTAQKEFPGGNRARSVGVTNNNLSVQNGGNKMPSFRPSVQPPFQPPPNYKSHGTILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRPISEIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTMWGEFCNREGHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDRGGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCYAACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQEAGEEILGCSAKELYLLKYEEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRVKITVVKADKVNYTSESRHLLDLISKCP* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0117 622 CDD RPA1_DBD_A 180 283 - -
Vvi11g0117 622 SUPERFAMILY Nucleic acid-binding proteins 444 620 IPR012340 -
Vvi11g0117 622 Gene3D - 4 111 IPR012340 -
Vvi11g0117 622 FunFam Replication protein A subunit 290 428 - -
Vvi11g0117 622 NCBIfam replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g0117 622 PANTHER REPLICATION FACTOR A 1, RFA1 191 599 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi11g0117 622 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Vvi11g0117 622 Pfam OB-fold nucleic acid binding domain 192 273 IPR004365 GO:0003676
Vvi11g0117 622 Gene3D - 177 287 IPR012340 -
Vvi11g0117 622 Gene3D - 290 431 IPR012340 -
Vvi11g0117 622 FunFam Replication protein A subunit 429 621 - -
Vvi11g0117 622 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi11g0117 622 CDD RPA1_DBD_C 447 620 IPR047192 -
Vvi11g0117 622 MobiDBLite consensus disorder prediction 111 130 - -
Vvi11g0117 622 Gene3D - 432 621 IPR012340 -
Vvi11g0117 622 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi11g0117 622 Pfam Replication protein A OB domain 301 405 IPR031657 -
Vvi11g0117 622 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Vvi11g0117 622 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Vvi11g0117 622 CDD RPA1_DBD_B 312 419 - -
Vvi11g0117 622 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Vvi11g0117 622 FunFam Replication protein A subunit 177 286 - -
Vvi11g0117 622 FunFam Replication protein A subunit 4 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0117 Vvi-Chr11 1112633 1114921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0117 26 620 Core DNA Replication Machinery Family AT2G06510 72.581 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0117 K07466 - vvi:100268119 1226.85