Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0110 ATGGGAAGAAGACCTTGCTGTGCCAAAGAGGGACTCAACAGAGGATCATGGTCTGCTTGGGAAGATAAGATCCTCTGCAACTATGTTGAAGTCCATGGAGAAGGGAAATGGAGAGACCTTCCTCAAAGAGCTGGTTTGAAAAGATGTGGGAAGAGTTGCAGACTGAGATGGTTGAATTATCTGAGGCCAGACATTAAGAGAGGCAACATCTCTTCGGAAGAAGAAGAACTCATTATCAGACTGCATAAGCTCCTTGGCAACAGGTGGTCATTGATCGCCGGTAGGTTGCCGGGGCGTACGGACAATGAAATCAAGAACTACTGGAACACAAATTTGAGCAAGAGATTGCAAGCATCCAAGGGTCAAAATTCACCTAACAAAAAGGTCGAAAATCCGAAAAACCAGACTTCAGGAACTGGGAAATCATCAGCGGAACCTCACACAGTCATCCGAACAAGAGCAGTGCGATGCTCCAAGGTTATAATCCCTCGAGTCCAGGCCGATTTCGACGAAAACCCGTCTCCTAAAATGGCAGTTCCCACATCGGAGCCCTCAAGTTCAGCACTGGAACAGGGCGAAACCGCCAATTTTTTCATGGGCTTCGACATTGGCGACCTCCTTACCTCTGATGCTCTCAACTCATTTCTAGACCAAGATGAAGAGATGGGTGAAAATAACAGTAATGGGGTGAGCGACCTCTTTCCTCCTTGTTCCGATTTTCTCGCCCCGGAGATTGAGAATCAAGAAGGAGTGAGTGGTCTTCTTCAACCCAGTGAAGCTTTGGAGCTCAAGACACTGGCATCTTTTCTGAATTCTGAAGATGAATGGATTACTGAAAATAATCAAGTTCCATAG 855 0.4643 MGRRPCCAKEGLNRGSWSAWEDKILCNYVEVHGEGKWRDLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISSEEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLSKRLQASKGQNSPNKKVENPKNQTSGTGKSSAEPHTVIRTRAVRCSKVIIPRVQADFDENPSPKMAVPTSEPSSSALEQGETANFFMGFDIGDLLTSDALNSFLDQDEEMGENNSNGVSDLFPPCSDFLAPEIENQEGVSGLLQPSEALELKTLASFLNSEDEWITENNQVP* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0110 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi11g0110 284 MobiDBLite consensus disorder prediction 116 146 - -
Vvi11g0110 284 MobiDBLite consensus disorder prediction 170 189 - -
Vvi11g0110 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi11g0110 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi11g0110 284 Gene3D - 70 143 - -
Vvi11g0110 284 CDD SANT 16 61 IPR001005 -
Vvi11g0110 284 SMART sant 66 114 IPR001005 -
Vvi11g0110 284 SMART sant 13 63 IPR001005 -
Vvi11g0110 284 MobiDBLite consensus disorder prediction 116 149 - -
Vvi11g0110 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 174 - -
Vvi11g0110 284 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi11g0110 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi11g0110 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi11g0110 284 FunFam Transcription factor TT2 70 140 - -
Vvi11g0110 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi11g0110 284 CDD SANT 71 112 IPR001005 -
Vvi11g0110 284 FunFam MYB-related transcription factor 13 66 - -
Vvi11g0110 284 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0110 Vvi-Chr11 1065535 1067013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0110 1 124 MYB Transcription Factor Family AT1G06180 68.548 1.61e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0110 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0110 K09422 - vvi:100264512 571.237