Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0109 ATGGGAAGGAAACCCTACTGTGTGAAAGAGGGACTCAACAGAGGGACATGGTCTGCTTTGGAAGATAAAATTCTCTGCAACTACATTGAAATCTATGGAGAAGGCAAATGGAAAGAGGTTCCTCCGAGAGCTGGTTTGAAGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTGAATTACCTGAGGCCTGATATTAAGAGAGGCAACATCTCTGAGGATGAAGAAGAGCTCATCATCAAGCTGCATAAGCTCCTTGGTAATAGGTGGTCGTTGATCGCCGGAAGGTTACCGGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAACTTGAAGAAGAAACTTCTGCCCCAACATTCTCCTCACAAACAACGAACTAAATTCAAATCCAACACCCCTCTCCCTCGAAATTCCTCGTCTCATCATACAGTCATCCGAACCAAAGCCGTTAGATGCATGCAACTCGATTTCAGTCATGCATTTCCGACTAGGTCGCAGCCCGGAACTCTTTGTCCTCCGGATTTCGATATGGGACAGGTTTTTGGATCAGATGGCTTCAGCTCTTTCTTCCACCCAAGTGAAGGGATGACTGAAGATAATAACGTGGTGGGCGGAGACTTACCATCAAGTTGGCCGGAGTTGTCTTTTTCAACCAAATGA 663 0.46 MGRKPYCVKEGLNRGTWSALEDKILCNYIEIYGEGKWKEVPPRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIKLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLKKKLLPQHSPHKQRTKFKSNTPLPRNSSSHHTVIRTKAVRCMQLDFSHAFPTRSQPGTLCPPDFDMGQVFGSDGFSSFFHPSEGMTEDNNVVGGDLPSSWPELSFSTK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0109 220 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi11g0109 220 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi11g0109 220 FunFam Transcription factor TT2 70 140 - -
Vvi11g0109 220 MobiDBLite consensus disorder prediction 128 143 - -
Vvi11g0109 220 CDD SANT 16 61 IPR001005 -
Vvi11g0109 220 MobiDBLite consensus disorder prediction 119 143 - -
Vvi11g0109 220 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi11g0109 220 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi11g0109 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi11g0109 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi11g0109 220 Gene3D - 7 67 - -
Vvi11g0109 220 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi11g0109 220 Gene3D - 70 140 - -
Vvi11g0109 220 CDD SANT 71 112 IPR001005 -
Vvi11g0109 220 FunFam Myb transcription factor 14 66 - -
Vvi11g0109 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 154 - -
Vvi11g0109 220 SMART sant 13 63 IPR001005 -
Vvi11g0109 220 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0109 Vvi-Chr11 1055765 1057645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0109 1 167 MYB Transcription Factor Family AT4G38620 51.429 2.80e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0109 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0109 K09422 - vvi:100250940 461.455