Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0108 ATGGGGAGGAGTCCTTGTTGTTCAAAGGAGGGCTTGAACAGAGGGGCTTGGACTGTGGTTGAGGACAAGATTCTAACAGAGTACATCAAAGTCCATGGAGAAGGCAGATGGAGAAACCTCCCCAAGAAAGCAGGCTTGAAGCGATGTGGGAAAAGTTGCAGGCTGCGTTGGTTGAACTATCTCAGACCAGACATCAAGAGAGGCAACATATCACATGATGAAGAAGATCTCATTGTCAGGCTTCACAAGCTCTTGGGGAACAGATGGTCTCTGATAGCCGGAAGACTTCCAGGGCGAACAGACAATGAAATCAAGAATTACTGGAACACCAACTTAGTAAAGAAGATGCAAAGCAGACAAACCCCCGGGTCAAGCCAGTCTGCCGACAGGAACAAGAACAAGGCTGTGGTGGAGGAGCCAAGCAGGTCAAAAACGGAGACTAATGTGATCAGAACCAAAGCCACGCGGTGCTCCAGAGTATTCATAGCTCCACTGGCAGACAGAAGTACTAATGAAAATAGTATCCCTAGGCCTAGGCCTGCAGAGCCTGCAGGTCCATCCATGACACCAGACCTTTCCATGTGTCACTTGGTGGAAACTGGAGCATCATCACTTGTTGATACAGGAGATTTTTCTGTGGATTTCATGGCGGATATGAACATGGGGGAGCTGTGCTTATCAGATCTTCTAAACTCCAACTTCTCAGACTTGTGTGAGGTCCATTGTGAGAATGGTAATGAACTGTCTGCTTCATCTGATGGGGTGGCGCCATTAATGTTCTCCAAGGAAATGCTGGAGGATTGGAGCAGTCTGGGCTGTTACCCCCTACAGCCAAATGTGGGTTCAAACCTCAACTCCTTCACCTCTTTTCTTGACTCTGGAGGTGACTGGCTTGGAGGAGAATAA 906 0.4823 MGRSPCCSKEGLNRGAWTVVEDKILTEYIKVHGEGRWRNLPKKAGLKRCGKSCRLRWLNYLRPDIKRGNISHDEEDLIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLVKKMQSRQTPGSSQSADRNKNKAVVEEPSRSKTETNVIRTKATRCSRVFIAPLADRSTNENSIPRPRPAEPAGPSMTPDLSMCHLVETGASSLVDTGDFSVDFMADMNMGELCLSDLLNSNFSDLCEVHCENGNELSASSDGVAPLMFSKEMLEDWSSLGCYPLQPNVGSNLNSFTSFLDSGGDWLGGE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0108 301 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi11g0108 301 MobiDBLite consensus disorder prediction 115 149 - -
Vvi11g0108 301 CDD SANT 16 61 IPR001005 -
Vvi11g0108 301 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi11g0108 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi11g0108 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi11g0108 301 Gene3D - 14 66 - -
Vvi11g0108 301 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 158 - -
Vvi11g0108 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi11g0108 301 FunFam MYB-related transcription factor 13 66 - -
Vvi11g0108 301 SMART sant 13 63 IPR001005 -
Vvi11g0108 301 SMART sant 66 114 IPR001005 -
Vvi11g0108 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi11g0108 301 MobiDBLite consensus disorder prediction 132 146 - -
Vvi11g0108 301 CDD SANT 71 112 IPR001005 -
Vvi11g0108 301 Gene3D - 70 144 - -
Vvi11g0108 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi11g0108 301 FunFam Transcription factor TT2 70 140 - -
Vvi11g0108 301 MobiDBLite consensus disorder prediction 168 190 - -
Vvi11g0108 301 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0108 Vvi-Chr11 1044636 1045794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0108 1 146 MYB Transcription Factor Family AT2G16720 61.644 2.46e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0108 Myb_DNA-binding 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0108 K09422 - vvi:100254224 617.076