Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0103 ATGATGAGTGGAAGAAATAGGTTTCCATTCACTGCAACTCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGCTTCAGGGATGCCCATTCCTCCTGATCTCATCTTCTCCATCAAAAGAAGCTTGGACTCTCCACTCCCTACTTCAAAGCTCTTCCCAACCCACCAATCCCAACACATTGGGTGGAACTGTTTTCAGATGGGTTTGGGGAGGAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTGCAAAGGAAGCATACCCAGATTCGAAGTACTGTGAGAGACATATGCACCGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTATGACACCCTCAAAAACACCACCAACAGTAACTACTCCTACTGCTACAATGGCAGCAAACCCACCACCACCAATCTCTTCAATCACTGTAAACTCCTCCAACCCCACTTCATACTCTCTAGCTTTAGAGACCCAAAATCACCACACCCATCGTCACCCTTCTTGCTACAACACCCATCTCCACCTCCCCTTCCTTTATCCCCATTCATCTTCTTCAAGGCCACCTGGGTTTGGAGGTGGGGTTGAGTTGTCACCTCAACACAACACCACCCATTTGCTTTTGGACTCTGGTTCATATTCCCAGACAGATTACAGAAACAGATATGTTCATGGATTGAAGGAGGAGGTGGATGAGCATGCTTTCTTCTCAGAACAACCTTCAGGGGCTACAAGGAGTTTTTCCGGCTCATCAATGGATGATCCTTGGCGGCTTACTCCACTAAAAATGAATTCTTCACCGTTAGACCATTCAAAACAGAGGAGCTGCTCTGTTTTACAGAGTGACTACTCTTGTTTGCAGCTTCAAAGCCTCAGTGATACCTCCAACCAGAAGCAGGATCAGCATTTCTATGTACTGGGTAGTAATCTCAAGTATGAAAAACATGAGAGAGAAGAACCCGAGAAGACGGTGCACCGCTTCTTCGATGAATGGCCACCCAAGAGCAGAGATCCATGGCCTGATTCAGAAGACAAGTCCCCCAGAGATGCATTGGTCTCAACCACCCAACTCTCAATTTCTATGCCAAACTCTTCATTTGACTTCTCCATCTCCAATTCTAGACCCCATAATGATGATTGA 1164 0.4674 MMSGRNRFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRSLDSPLPTSKLFPTHQSQHIGWNCFQMGLGRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVEVMTPSKTPPTVTTPTATMAANPPPPISSITVNSSNPTSYSLALETQNHHTHRHPSCYNTHLHLPFLYPHSSSSRPPGFGGGVELSPQHNTTHLLLDSGSYSQTDYRNRYVHGLKEEVDEHAFFSEQPSGATRSFSGSSMDDPWRLTPLKMNSSPLDHSKQRSCSVLQSDYSCLQLQSLSDTSNQKQDQHFYVLGSNLKYEKHEREEPEKTVHRFFDEWPPKSRDPWPDSEDKSPRDALVSTTQLSISMPNSSFDFSISNSRPHNDD* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0103 387 PANTHER GROWTH-REGULATING FACTOR 5 8 373 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi11g0103 387 MobiDBLite consensus disorder prediction 322 387 - -
Vvi11g0103 387 MobiDBLite consensus disorder prediction 111 142 - -
Vvi11g0103 387 MobiDBLite consensus disorder prediction 322 356 - -
Vvi11g0103 387 Pfam WRC 79 121 IPR014977 -
Vvi11g0103 387 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi11g0103 387 MobiDBLite consensus disorder prediction 126 142 - -
Vvi11g0103 387 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi11g0103 387 MobiDBLite consensus disorder prediction 357 380 - -
Vvi11g0103 387 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi11g0103 387 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0103 Vvi-Chr11 1000359 1001843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0103 3 121 GRF Transcription Factor Family AT3G13960 72.727 6.39e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi11g0103 WRC 3.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0103 - - vvi:100261173 786.563