Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0084 ATGGCAGTGAAGAAGATCACGTGGAGATCGGTTTTCCCGGCATGTTACGGGTCGGAAAAGATGGCGTCCAAGCGGAGGAAGGCGGCAGTGGTGGCGAAGCAGACCTCGTTTCAGAGGATTTCGATATCGGATTTGAGTAATCCGGGGTCGACGCTGTCTGAGGATCTGTCCACCTCTCTGATGGGGTCAAACCTTCATGTGTTCACGCTGACTGAGCTGAAGGTGATCTGCCAGAACTTCTCCTCCAACAACTTCATCGGAGAAGGCGGGTTCGGCCCCGTCCACAAGGGCTTCATTGATGACAAGCTCCGCCCTGGTTTGAAGGCTCAGCCCGTGGCTGTCAAGCTTTTGGATTTGGAAGGCTTGCAGGGCCATCGAGAATGGCTGACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACATGCCGCGAGGAAGCTTGGAGAATCAGCTCTTCAGAAGGTACTCTGTTTCTCTTCCATGGTCCACAAGAATGAAAATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTGATCATACTCCCAAATTATCAGATTTTGGTCTAGCCAAGGACGGCCCTGAAGGTGATGACACACATGTTTCAACCCGAGTAATGGGGACACAAGGGTATGCTGCTCCAGAGTACATTATGACAGGGCATTTGACAGCAATGAGCGATGTTTACAGCTTTGGAGTGGTGCTCTTAGAGCTACTAACTGGGAGAAGATCAGTGGATAAGACCCGGCCTAACAGGGAGCAGAACCTAGCAGAGTGGGCTAGGCCACAACTGAACGATTCCAGGAAGCTTGCCCGCATAATGGATCCAAGACTTGAAGGTCAATACTCAGAAGCAGGGGCTCAGAGCGCTGCTGCATTGGCTTACCAGTGCCTGAGCCACAGGCCAAAGCATAGGCCAACAATGAGCACTGTGGTTAAGACCCTGGAGCCTCTCCAGGACTACAATGAAATTCCAGTTGGGACCTTTGTTTACACTGTCCCAAGCGAAAATGACTTGCCTAAGGAGGAGACGAAGGAAGGAGGAGAAGCACAGAAGGAACCCAAAAAAGAAAGTTCCCATCAAGGCCATAGGCATAGGATGAGATCACCAAAATCCCCAACCATTTATTCAGAAACCGCTCTACGCCAGAACCTCAGAAACAGTCCAAACTCTCCCCTGCATCCCAGGAGCAGGGGAAGTTAG 1329 0.5071 MAVKKITWRSVFPACYGSEKMASKRRKAAVVAKQTSFQRISISDLSNPGSTLSEDLSTSLMGSNLHVFTLTELKVICQNFSSNNFIGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLEGLQGHREWLTEVIFLGQLRHPHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFRRYSVSLPWSTRMKIALGAAKGLAFLHEAEKPVIYRDFKASNILLDSDHTPKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPNREQNLAEWARPQLNDSRKLARIMDPRLEGQYSEAGAQSAAALAYQCLSHRPKHRPTMSTVVKTLEPLQDYNEIPVGTFVYTVPSENDLPKEETKEGGEAQKEPKKESSHQGHRHRMRSPKSPTIYSETALRQNLRNSPNSPLHPRSRGS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0084 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vvi11g0084 442 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Vvi11g0084 442 MobiDBLite consensus disorder prediction 374 442 - -
Vvi11g0084 442 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672|GO:0006468
Vvi11g0084 442 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0084 442 PANTHER OS01G0588500 PROTEIN-RELATED 45 361 - -
Vvi11g0084 442 MobiDBLite consensus disorder prediction 380 402 - -
Vvi11g0084 442 CDD STKc_IRAK 86 360 - -
Vvi11g0084 442 MobiDBLite consensus disorder prediction 414 442 - -
Vvi11g0084 442 Gene3D Transferase(Phosphotransferase) domain 1 163 369 - -
Vvi11g0084 442 Gene3D Phosphorylase Kinase; domain 1 46 162 - -
Vvi11g0084 442 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Vvi11g0084 442 FunFam Probable serine/threonine-protein kinase PBL8 163 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0084 Vvi-Chr11 867815 869712 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0084 66 383 Glycoside Hydrolase AT3G07070 51.713 4.36e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi11g0084 PK_Tyr_Ser-Thr 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0084 - - vvi:100257697 863.218