Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0064 ATGAAGAAGTCACCATTGCCGGTGCAAAGTGTATCTGGTACTGAGAAGAAAGTATGTGGAAAGGAAGCTCTGGTCAAGCTCTTAAGATGGCATTTTGGGCATGCGGAATTCAGGGGAAGGCAGTTGGAGGCCATTGAAGCCATCTTATCGGGAAGAGATTGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGCCTTGATGGAAAACCAAGTGATGGCATTGAAGGAAAAAGGGATTGCTGCAGAATTCCTTTCCTCAACTCAGACCACAAAAGTTAGAGATAAGATCCATGAAGACCTTCAATCTGGAAAACCATCCTTAAGGCTACTGTATGTAACACCAGAATTGATTGCAACACCAGGGTTTATGTCAAGGTTGACAAAGATTCATGCTAGAGGGTTGCTGAATCTGATTGCCATAGATGAGGCTCATTGCATTTCTTCATGGGGACATGACTTCAGGCCTAGCTACCGGAAACTTTCATCTTTGAGGAACCACCTCCCAGATGTACCAATATTGGCATTAACAGCCACAGCTGTTCCTAAGGTTCAGAAGGATGTGATAGAGTCCTTGTGCTTGCAAAATCCTTTAGTCCTAAAATCATCATTCAATCGTCCTAATATATACTATGAAGTTCGATACAAAGATCTGTTGGATGATGTCTATGCTGATCTATCTAAGCTACTCAAATCTTGTGGGAATGTTTGTGGAATTGTTTACTGCCTTGAGCGTACTACTTGTGATGAATTGTCTGCTCATCTATCAAAAAATGGCATCTCTTCTGCTGCTTATCATGCAGGGCTAAACAATAAATTACGGAGTTCCGTCTTAGATGATTGGATTTCTTCTAAGATACAAGTTGTTGGCATAGACAGAAAGGATGTCAGAATCGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGTAGAGCTGGTCGAGATCAATTGCCCTCACGGAGTCTCTTGTACTATGGGATAGATGACCGCAAAAGAATGGTTGGATTACCATCTTCAACACCTACCTCTCCATTATCTTTTAACTTGCAACACCAATGTGTCACTAGAGTTTTGCTTAAGGATATAGAAAATATTTGGCAGGAATTTATTCTGAGCAATGCAGAGAGCAAGAAGTTGCAGTCCTCGAGTTCGCAGGATGGGATGTCAAAAAAGTCTCTTGCCGATTTCAGTCATATGGTTGAATACTGTGAAGGATCTAGTTGCCGAAGAAAAAAAATCCTTGAGAATTTTGGGGAACAGGTAGCTGCATCAATATGTAGAAAATCATGTGATGCCTGTAAACATCCAAATCTAGTTGCAAAGTATTTGGAGGAGTTTGCATCTGCCTGTGCTCTTCGCCAGAACAATGTATTCTCTCGAATTTTTATCAGCAGCTCCTCTGATCTGGTTGATAAAGAGCAACTCACCGAATTCTGGAATCGTGATGATGAAGTAAGCGGTTCCGAGGAAGATATATCCGATTCTGATGGTATATCAGCTTGCCCTAACATTCATTAA 1599 0.414 MKKSPLPVQSVSGTEKKVCGKEALVKLLRWHFGHAEFRGRQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTQTTKVRDKIHEDLQSGKPSLRLLYVTPELIATPGFMSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPILALTATAVPKVQKDVIESLCLQNPLVLKSSFNRPNIYYEVRYKDLLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMVGLPSSTPTSPLSFNLQHQCVTRVLLKDIENIWQEFILSNAESKKLQSSSSQDGMSKKSLADFSHMVEYCEGSSCRRKKILENFGEQVAASICRKSCDACKHPNLVAKYLEEFASACALRQNNVFSRIFISSSSDLVDKEQLTEFWNRDDEVSGSEEDISDSDGISACPNIH* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0064 532 Gene3D - 6 226 IPR027417 -
Vvi11g0064 532 PANTHER DNA HELICASE RECQ FAMILY MEMBER 15 483 - -
Vvi11g0064 532 CDD SF2_C_RecQ 227 352 - -
Vvi11g0064 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 390 IPR001650 -
Vvi11g0064 532 CDD DEXHc_RecQ 26 226 - -
Vvi11g0064 532 NCBIfam RecQ family ATP-dependent DNA helicase 27 412 IPR004589 GO:0004386|GO:0006310
Vvi11g0064 532 SMART helicmild6 270 343 IPR001650 -
Vvi11g0064 532 Pfam Helicase conserved C-terminal domain 257 341 IPR001650 -
Vvi11g0064 532 FunFam ATP-dependent DNA helicase 18 226 - -
Vvi11g0064 532 SMART ultradead3 33 235 IPR014001 -
Vvi11g0064 532 Pfam DEAD/DEAH box helicase 41 206 IPR011545 GO:0003676|GO:0005524
Vvi11g0064 532 Gene3D - 227 479 IPR027417 -
Vvi11g0064 532 Pfam RecQ zinc-binding 407 461 IPR032284 -
Vvi11g0064 532 MobiDBLite consensus disorder prediction 509 532 - -
Vvi11g0064 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 219 IPR014001 -
Vvi11g0064 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0064 Vvi-Chr11 763366 769444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0064 1 341 Eukaryotic Initiation Factors Gene Family AT3G19760 20.588 2.53e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0064 - K10901 vvi:100242171 932.939