Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0062 ATGGCGGATTCCAACTCCAAACATCAGGATTCTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATGGATGGCATGCAATAAGAGATATGGTGGTTCGTGGGGCACCCGCAATTGCAATAGCAGCAGCCCTCTCCCTGGCTGTGGAAGTATCCAACTTAGAGGATTTTATTGGGACATCTGATGATGCAGCATCTTTCCTTAACAGCAAATTGGACTATCTTGTTACTAGCCGACCTACTGCTGTGAATCTTTCAGATGCTGTAACAAAACTTAAAGGAGTAATATCAAATGCTGCTGCCACTGCTTTTGAAGCCATGAGTGTTTTTCAGGCTTTTCTAGAGGCTGCTGAAGACATGCTTAGGGAGGATGTTGCTGCAAACAGAGCAATTGGGTTGTATGGAGCAAGTTTTCTTCAAAGCCATATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCATGCTGAAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTCTTATAGCAGACTCTGCTGCAGCTGCATTAATGCAGGCTGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCATCACCATATTCCATTCTTTGTGGCTGCACCCTTGACTTCCATTGATTTAACCCTTTCTTCGGGACAAGAAATTGTTATAGAGGAAAGATCCCCAAAGGAATTGTTGAACTCGCGTGGAGGACTCGGGGAACAGGTTGCTGCATCTGGAATTTGTGTTTGGAACCCTGCTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACAATGCAACCAGTCACTGCTGTAAATAA 1131 0.4465 MADSNSKHQDSLQSICYKRGSLQLLDQRKLPLETVYLEIKGADDGWHAIRDMVVRGAPAIAIAAALSLAVEVSNLEDFIGTSDDAASFLNSKLDYLVTSRPTAVNLSDAVTKLKGVISNAAATAFEAMSVFQAFLEAAEDMLREDVAANRAIGLYGASFLQSHIKDSKNLSILTHCNTGSLATAGYGTALGVIRSVHAEGILLRAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMQAGRVDAVIVGADRVAANGDTANKIGTYSLALSAKHHHIPFFVAAPLTSIDLTLSSGQEIVIEERSPKELLNSRGGLGEQVAASGICVWNPAFDVTPADLIAGIITEKGVITKTGDVFDIKDFIHNATSHCCK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0062 376 Pfam Initiation factor 2 subunit family 54 355 IPR000649 GO:0044237
Vvi11g0062 376 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 8 367 - -
Vvi11g0062 376 Gene3D - 10 202 IPR027363 -
Vvi11g0062 376 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 12 363 IPR005251 -
Vvi11g0062 376 SUPERFAMILY NagB/RpiA/CoA transferase-like 9 358 IPR037171 -
Vvi11g0062 376 Gene3D - 203 367 IPR042529 -
Vvi11g0062 376 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 41 356 IPR011559 GO:0044249
Vvi11g0062 376 FunFam Methylthioribose-1-phosphate isomerase 168 364 - -
Vvi11g0062 376 FunFam Methylthioribose-1-phosphate isomerase 10 202 - -
Vvi11g0062 376 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 13 356 IPR005251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0062 Vvi-Chr11 754751 759491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0062 51 376 Eukaryotic Initiation Factors Gene Family AT2G05830 73.394 2.22e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0062 K08963 - vvi:100268031 702.205