Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0056 ATGGATTTTGATGAGAAGCAGGCTGTTGTCTGTGACAATGGGTCTGGCTTAGTGAAGGCTGGTTTTGCTGGAGACGATGCACCATGTGTAGTTTTTCCTAGTGTGATAGGCTGGCCCCGAAACAAGCATGCGATGATTGGCATTGGACAGAAGGAAATGTACTTAGGAGATGAAGCTCAAGCAAGACGTGGTGTCCTCAGATTAAGTTACCCCATTAATCATGGAATGGTGAGAGATTGGGAAGCAATGGAGAGACTCTGGCAGCACACTTTTGAGAAGGAGCTCAGGGTTTCCATTGAAGAACGACCTGTCCTCTTAACAGAGCCACCCTTGAATCCTAAGTTCAATAAGGAGAAGATGGTGGAGATCATGTTTGAAGCTTTTGAAATCCCAGCCACCTATGTTGCAATTCAAGCTGTGCTCTCCTTGTATGCCAGTGGCCGAACCACAGGTATTGTAATGGACTCTGGAGAAGGAGTCACACATGTGGTTCCCATCTATGAGGGCTATGCACTTCCACATGCAATTCAACGTCTCGATCTAGCAGGCAGGGACCTCACAGACTACCTCACCAAGATCCTAACTGAAGAAGGCTACGTGTTCACCACATCAGCTGACAGAGAAATTGTTAAGGACATAAAGGAACAAACCACATACGTAGCAATGGATTTTGAGAAGGAACTAGCCACATCAAGGGAAAGCTTAGAGCTTGACAAGCAATATGAATTGCCAGACGGGCAAGTCATAACAATCGGAACAGGACGGTTCAAGTGCCCTGAAATACTATTTGATCCAAGCAAAGTGGGAATAGAGTCATGTGGAGTACATGATATCGTGTTGAAGTCAATTAGAAGGTGTGATATGGATATCAGGAGAGACATGTATGGGAATGTGGTGCTTAGTGGGGGCACTACTATGGTGCCAGGCTTGGCTGATAGGCTGGCGAAGGAGCTGAGCTCACTGGCACCTCCTGGGGTGAGGGTGAGAGTGGTTGCACCACCAGAGAGGAAGTATAGTGTTTGGATTGGTGGGTCCATTCTGGCTTCACTAAGCACCTTTGAGCAGATGTGGATTAAAAAGGAAGAGTACATGGAGTCCGGTTCCTCCATTGTCCACATGAAATGCTTCTAA 1131 0.4677 MDFDEKQAVVCDNGSGLVKAGFAGDDAPCVVFPSVIGWPRNKHAMIGIGQKEMYLGDEAQARRGVLRLSYPINHGMVRDWEAMERLWQHTFEKELRVSIEERPVLLTEPPLNPKFNKEKMVEIMFEAFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLDLAGRDLTDYLTKILTEEGYVFTTSADREIVKDIKEQTTYVAMDFEKELATSRESLELDKQYELPDGQVITIGTGRFKCPEILFDPSKVGIESCGVHDIVLKSIRRCDMDIRRDMYGNVVLSGGTTMVPGLADRLAKELSSLAPPGVRVRVVAPPERKYSVWIGGSILASLSTFEQMWIKKEEYMESGSSIVHMKCF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0056 376 FunFam Actin, alpha skeletal muscle 142 218 - -
Vvi11g0056 376 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
Vvi11g0056 376 FunFam Actin-related protein 7 9 141 - -
Vvi11g0056 376 PRINTS Actin signature 50 61 IPR004000 -
Vvi11g0056 376 PRINTS Actin signature 27 36 IPR004000 -
Vvi11g0056 376 PRINTS Actin signature 62 84 IPR004000 -
Vvi11g0056 376 PRINTS Actin signature 116 129 IPR004000 -
Vvi11g0056 376 PRINTS Actin signature 237 253 IPR004000 -
Vvi11g0056 376 PRINTS Actin signature 141 160 IPR004000 -
Vvi11g0056 376 SMART actin_3 6 376 IPR004000 -
Vvi11g0056 376 FunFam actin, alpha sarcomeric/skeletal-like 273 339 - -
Vvi11g0056 376 Pfam Actin 4 376 IPR004000 -
Vvi11g0056 376 SUPERFAMILY Actin-like ATPase domain 4 153 IPR043129 -
Vvi11g0056 376 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Vvi11g0056 376 Gene3D - 9 370 - -
Vvi11g0056 376 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Vvi11g0056 376 PANTHER ACTIN 8 369 IPR004000 -
Vvi11g0056 376 Gene3D - 139 339 - -
Vvi11g0056 376 FunFam Actin, alpha skeletal muscle 181 272 - -
Vvi11g0056 376 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Vvi11g0056 376 Gene3D Actin; Chain A, domain 4 181 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0056 Vvi-Chr11 713295 714739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0056 2 376 Cytoskeleton Gene Families AT3G12110 68.533 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0056 - - vvi:100266293 744.962