Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0053 ATGGCCGCTGTTCGTCTTCTTCTCAGGTCTCACCTTCTTATCTTCTTCTTCCTCTTCCTTTCCTTCTTCCCTCTTTCCCTCTCCTTGTCAGAGAATGAGGCTCTCCTCAAACTCAAGAAATCTTTGGTCCATACTGGCGCTCTTGATTCTTGGGTTCCCAGCTCTAATCCTTGCCAGGGCCCATGGGATGGGCTCATCTGTTTAAATGGCATTGTCACTGGTCTCCGTCTTGGGAGTATGGATCTTTCCGGGAACATCGACGTTGACGCGTTGATTGACATCCGTGGCCTTCGGACTATCAGTCTTACCAACAATTCATTCTCTGGTCCACTGCCGGCGTTTAATCGTCTCGGTTCTTTGAAGGGTCTTTACTTAACTAGGAATCAGTTCTCCGGCGAAATACCTTCTGATTACTTCTCCACTCTGACGTCTCTGAAGAAACTCTGGCTCTCTAAAAACAAATTCACGGGACAAATTCCGAAATCGGTGATGCAGCTAACCCATCTTATGGAACTGCACCTCGATGATAACCAATTCTCAGGGCCCATTCCATCTACACTGCCACTGTCGCTAAAGTCTCTCGGCCTGTCAAACAACAAACTGGAAGGGGAAATTCCAGAGACTTTAGCCAAATTTGACGCCAAAGCATTCGAAGGAAACGAGGGGCTTTGCGGGAAGCAACTGGGCAAGCAGTGTGAGCAAGCAAACAAGGCATTATCGCCTTCGCCTCCGCCTCCGCCTCCGTCTCCAGAGATCGAGAAATCCAAGATCAACATCTCAAAGGTCATGACCATGGCGGGGATAGCATTCTTAATGATAGCCCTCTTGGTCTTCACGTCGCTCGTTTCGTCGAGCCGCAGAAAGGAGGAGTTCAACATTCTGGGCAAAGAGAACCTGGACGAGGTGGTGGAAATACAAGTATCAGGGTCGACCCGAAAGGGAGCCGATTCGTTGAAGAAAGCAAACGGATCAAGCCGGAGAGGGTCCCAGCACGGGCGGGCCAGCGTGAGCGATCTGGTGATGATAAACGACGAGAAGGGTTCCTTTGGGTTGCCGGATTTGATGAAAGCCGCGGCTGAGGTTCTGGGTAACGGTGGGTTGGGGTCGGCGTACAAGGCAGTGATGGCGAATGGCCTGGCGGTGGTGGTGAAGAGGATGAGGGAGATAAATAGATTGGGAAGAGATAGCTTTGACGCCCAGATCAGAAAGATTGGGAGACTACGCCATGAAAACATACTGACTCCATTGGCTTACCATTACAGGAAAGAGGAGAAGCTGCTGATCTCCGAATACGTTCCCAAAGGCAGCCTACTCTACGTCATGCATGGTGACCGTGGAATTTCTCATTCTGAGCTCAACTGGCCGACCCGATTGAAGATCATACAGGGAATAGCCAGTGGGATGAATTTCCTCCACTCCGAATTCGCATCCTTGGACCTGCCCCATGGAAATCTCAAGTCCAGCAACATTCTTCTCGATGAACACTACGTACCACTTCTCACAGACTACGCCTTTTATCCATTAGTCAATGCGACCCAAGCCTCCCAAGCCATGTTCGCATACAGGGCTCAAGACCAACATGTTTCCCCCAAGTGTGACGTCTACTGTCTGGGAATCGTCATTCTTGAAATCATTACTGGGAAATTCCCCTCCCAGTATCTCAGCAATGGCAAGGGAGGAACTGACGTTGTCCAGTGGGTCAAATCCGCCATTGAAGAGAACAGAGAGACGGAGCTGATAGACCCAGAGATAGCAAGTGAAGCTTCAGAAAGGGAGATGCAGCGGCTCCTCCAGATCGCCGCTGAATGCACTGAAAGCAACCCTGAAAATCGACTAGACATGAAGGAAGCCATTAGGAGGATACAGGAGATAAAAGTTTGA 1881 0.5003 MAAVRLLLRSHLLIFFFLFLSFFPLSLSLSENEALLKLKKSLVHTGALDSWVPSSNPCQGPWDGLICLNGIVTGLRLGSMDLSGNIDVDALIDIRGLRTISLTNNSFSGPLPAFNRLGSLKGLYLTRNQFSGEIPSDYFSTLTSLKKLWLSKNKFTGQIPKSVMQLTHLMELHLDDNQFSGPIPSTLPLSLKSLGLSNNKLEGEIPETLAKFDAKAFEGNEGLCGKQLGKQCEQANKALSPSPPPPPPSPEIEKSKINISKVMTMAGIAFLMIALLVFTSLVSSSRRKEEFNILGKENLDEVVEIQVSGSTRKGADSLKKANGSSRRGSQHGRASVSDLVMINDEKGSFGLPDLMKAAAEVLGNGGLGSAYKAVMANGLAVVVKRMREINRLGRDSFDAQIRKIGRLRHENILTPLAYHYRKEEKLLISEYVPKGSLLYVMHGDRGISHSELNWPTRLKIIQGIASGMNFLHSEFASLDLPHGNLKSSNILLDEHYVPLLTDYAFYPLVNATQASQAMFAYRAQDQHVSPKCDVYCLGIVILEIITGKFPSQYLSNGKGGTDVVQWVKSAIEENRETELIDPEIASEASEREMQRLLQIAAECTESNPENRLDMKEAIRRIQEIKV* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0053 626 ProSiteProfiles Protein kinase domain profile. 356 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0053 626 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Vvi11g0053 626 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 625 IPR046959 -
Vvi11g0053 626 Gene3D Transferase(Phosphotransferase) domain 1 432 626 - -
Vvi11g0053 626 SUPERFAMILY Protein kinase-like (PK-like) 360 620 IPR011009 -
Vvi11g0053 626 SUPERFAMILY L domain-like 29 210 - -
Vvi11g0053 626 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 112 232 - -
Vvi11g0053 626 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Vvi11g0053 626 MobiDBLite consensus disorder prediction 313 337 - -
Vvi11g0053 626 MobiDBLite consensus disorder prediction 313 332 - -
Vvi11g0053 626 Pfam Protein kinase domain 360 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0053 626 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Vvi11g0053 626 Gene3D Ribonuclease Inhibitor 140 234 IPR032675 -
Vvi11g0053 626 Gene3D Phosphorylase Kinase; domain 1 323 431 - -
Vvi11g0053 626 Coils Coil 614 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0053 Vvi-Chr11 704010 705965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0053 12 624 Receptor kinase-like Gene Family AT3G42880 52.262 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi11g0053 Pkinase 9.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0053 - - vvi:109121417 1129.01