Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0052 ATGGCACTCTCCATTGCTTCTACGGCATTTTCTAGCCTTCCAACCAGGGAAGTATCTTCAAAACATTTTCCACGAAAACTGACAACATGGTTACCAGGAAGAGTTCGTTTGAATGCAACAAAAGGGGTATCTAGTGTTTGTGAACCACTTCCTCCCGACAGGCCATTGTGGTTCCCTGGTAGCTCACCTCCTGAGTGGCTTGATGGCAGTCTTCCTGGTGATTTTGGCTTCGACCCGCTTGGATTAGGGTCTGATCCGGAGTTACTTCGATGGTTTGCACAAGCTGAGCTGATGCACAGCAGATGGGCAATGCTTGCTGTAGCTGGGATTCTCATTCCAGAGTGCCTTGAGAGACTAGGCTTCATTGAGAATTTCTCCTGGTATGATGCTGGAGCCCAGGAGTTCTTTGCAGATCCCACAACCTTATTTGTTGTACAGTTAGCTTTGATGGGCTGGGTGGAGGGAAGAAGATGGGCTGATTTGATAAACCCTGGGTGTGTTGACATACAGCTCACGTTTCCAAATAAAGCAAAGCCAAAGCCTGATGTTGGATACCCGGGTGGCCTTTGGTTTGATCCCTTCATGTGGGGAAGAGGGTCTCCAGAGCCTGTGATGGTGCTAAGGACCAAGGAGATCAAGAACGGGCGTCTTGCAATGCTAGCTTTCGTGGGGTTCTGTTTCCAAGCCATTTATACTGGGGAAGGCCCCATTGAAAACTTGATGGCACATATTGCAGACCCTGGCCACTGCAATGTTTTCTCGGCTTTCACATCACAGTGA 780 0.4885 MALSIASTAFSSLPTREVSSKHFPRKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0052 259 SUPERFAMILY Chlorophyll a-b binding protein 53 258 - -
Vvi11g0052 259 Pfam Chlorophyll A-B binding protein 63 229 IPR022796 -
Vvi11g0052 259 FunFam Chlorophyll a-b binding protein, chloroplastic 64 249 - -
Vvi11g0052 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 257 IPR001344 GO:0009765|GO:0016020
Vvi11g0052 259 Gene3D Chlorophyll a/b binding protein domain 64 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0052 Vvi-Chr11 701351 703382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0052 52 259 Chloroplast and Mitochondria Gene Families AT3G61470 66.827 1.88e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0052 K08908 - vvi:100268126 549.666