Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0050 ATGTCGAGCTCCTCGGATATTGCAGACTCCGGAAGGTTTACCGGGCAGAGAGCGCCGGCGAGGGGACCGGAGAAGTCGAGTTTCTCGCAGACGTGCAGTCTGTTGAGCCAATACATAAAAGAGAAGGGCACGTTTGGAGATCTGAGTCTCGGGATGACATGCAGTCTGGAAGGAAACGGCACGCCCGAATCGCTCCGCCAGACAGCGACAACAACGACGATGAATTTATTTCCAATGACGGAAAGATCTGCTGGGGTTTCCGGCATTCCCGCCCGAAATATGAATCTTAAGTCCATGAATTTGTTCCCTCAACAAGCCGGTTTTGGTTCCTCTGTTTCTAAGGATGATGCCCCAAAGATAGTTAATTCCAGTGTAAAGAAGTCCGGAAACGTGGAGCCCCAAACAGCTCAAATGACTATTTTCTACGGTGGCCAAGTGATCGTGTTCAATGATTTTCCGGCGGACAAGGCAAAGGAAGTCATGCGCTTAGCTGGCATGGGAAGCTCCCCAGTCCCATCTACAACAGTCAAAAATCCAATTGATGCCGGCGGCATGGCTCCCTCCAACCCCAACGTTGTTCCTAATTTCGCAAACAGTTTGATCCAAGAGCGCATCCAAAGACCGGCTCAACCAGTTGCTTGTGAACTACCAATTGCAAGGAAAGCTTCCCTCCACAGGTTCTTGGAGAAGAGAAAAGATAGGATCACAGCAAGAGCACCATACAATATAAGCAACTCTCCTGCAGGTCCTCACAAACCTGCTGAAAGCAAGTCATGGCTGGGCTTGGCTGCCAAATCTCCAAAGTAG 807 0.5006 MSSSSDIADSGRFTGQRAPARGPEKSSFSQTCSLLSQYIKEKGTFGDLSLGMTCSLEGNGTPESLRQTATTTTMNLFPMTERSAGVSGIPARNMNLKSMNLFPQQAGFGSSVSKDDAPKIVNSSVKKSGNVEPQTAQMTIFYGGQVIVFNDFPADKAKEVMRLAGMGSSPVPSTTVKNPIDAGGMAPSNPNVVPNFANSLIQERIQRPAQPVACELPIARKASLHRFLEKRKDRITARAPYNISNSPAGPHKPAESKSWLGLAAKSPK* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0050 268 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 22 252 IPR040390 -
Vvi11g0050 268 MobiDBLite consensus disorder prediction 238 268 - -
Vvi11g0050 268 MobiDBLite consensus disorder prediction 1 27 - -
Vvi11g0050 268 Pfam tify domain 132 165 IPR010399 -
Vvi11g0050 268 SMART tify_2 131 166 IPR010399 -
Vvi11g0050 268 Pfam Jas motif 217 241 IPR018467 -
Vvi11g0050 268 ProSiteProfiles Tify domain profile. 131 166 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0050 Vvi-Chr11 683411 685332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0050 1 265 Tify Gene Family AT1G19180 46.520 7.38e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi11g0050 tify 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0050 K13464 - vvi:100254231 533.487