Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0049 ATGCAGCAGCAGAGACTGAAACAGCAGCAACAAGCCTTGATACAGCAATCGCTTCTTCAGCAGCAGTCTCTGTACCACCACCCTGGTCTCTTGGCTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGTCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCTATTGTGACTCTGAATGGAAGGCATCTGTTTGGTCAGCCAATCAAAGTTAATTGGGCATATGCTAGTAGTCAGAGAGAGGATACATCAGGTCATTACAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGGAAGCCCAAAGTGCAATTAATGACTTAAATGGAAGGTGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGTGCTGGAGGTAACGAGGACAAGCCAAATTCAGATGCCAAAAGTGTTGTGGAACTAACTAATGGAACATCTGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTATTGAAGATGTTCGGGTGCAACGAGATAAAGGCTTTGGTTTTGTGA 894 0.4519 MQQQRLKQQQQALIQQSLLQQQSLYHHPGLLAPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALSIVTLNGRHLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLNGRWLGSRQIRCNWATKGAGGNEDKPNSDAKSVVELTNGTSDGKDKSNDEAPENNLQYTTVYVGNLAPELTSTDIFMHLALELLKMFGCNEIKALVL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0049 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Vvi11g0049 297 CDD RRM1_PUB1 56 126 - -
Vvi11g0049 297 Gene3D - 138 218 IPR012677 -
Vvi11g0049 297 CDD RRM2_PUB1 138 217 - -
Vvi11g0049 297 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Vvi11g0049 297 SMART rrm2_1 140 213 IPR003954 GO:0003676
Vvi11g0049 297 SUPERFAMILY RNA-binding domain, RBD 53 218 IPR035979 GO:0003676
Vvi11g0049 297 Gene3D - 1 137 IPR012677 -
Vvi11g0049 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Vvi11g0049 297 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 276 - -
Vvi11g0049 297 SMART rrm1_1 140 213 IPR000504 GO:0003723
Vvi11g0049 297 SMART rrm1_1 55 124 IPR000504 GO:0003723
Vvi11g0049 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Vvi11g0049 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Vvi11g0049 297 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0049 Vvi-Chr11 670201 676341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0049 55 289 Eukaryotic Initiation Factors Gene Family AT3G16380 28.333 3.37e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0049 K13201 - vvi:100259344 528.094