Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0046 ATGGTGAGACCATCGGCGAGAAGAGACGGCGACCGCAACGACGTTGGCGGGCGTTACAAGGGCGTGAGGATGAGAAAGTGGGGGAGCTGGGTGGCGGAGGTTCGGCAGCCAAACAGCAGAGACAGAATCTGGCTAGGATCGTACGGAAAGCCGGAGGAGGCCGCCAGAGCATACGACGCCGCCGTGCTTTGCTTGCGTGGCTCGTCTGCAATTCTCAATTTTCCTTCAACCCCACCGGATATTCCCAACGCTGCTGATCTATCGCCGCCAGAAATTCAGGTCGCTGCGTCTAAACACGCTCGCAAGGCGCCGGAGGAGTGTGAAGGACCAGAGTTGAAAACGCCGGTCCAGCCTGAGCAATCGGCGGCAGGTCCAGTTCCAAATGAGTTGAAGTTTTCGATGCTTTTTGGGGAATCATCAGACATGCATGGATATTCAGAATGGACCTTTTAA 453 0.5585 MVRPSARRDGDRNDVGGRYKGVRMRKWGSWVAEVRQPNSRDRIWLGSYGKPEEAARAYDAAVLCLRGSSAILNFPSTPPDIPNAADLSPPEIQVAASKHARKAPEECEGPELKTPVQPEQSAAGPVPNELKFSMLFGESSDMHGYSEWTF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0046 150 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Vvi11g0046 150 FunFam Ethylene-responsive transcription factor 2 18 76 - -
Vvi11g0046 150 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Vvi11g0046 150 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vvi11g0046 150 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Vvi11g0046 150 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vvi11g0046 150 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Vvi11g0046 150 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vvi11g0046 150 MobiDBLite consensus disorder prediction 94 125 - -
Vvi11g0046 150 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Vvi11g0046 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0046 Vvi-Chr11 654774 655226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0046 9 135 AP2-EREBP Transcription Factor Family AT1G19210 48.031 2.52e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi11g0046 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0046 - - vvi:100245800 309.686