Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0045 ATGGTGAAGAAGGCGATCGGAGTAGGATCAGCCCCGGCGGAGAGCAGCGATTGCAGGTACAAGGGAGTGAGGAAGCGGAAGTGGGGGAAGTGGGTGTCGGAGATTAGGCTTCCCAACAGCCGCGAGCGGATCTGGTTGGGGTCCTACGACACGGCGGAGAAGGCCGCAAGGGCCTTCGACGCCGCTCTCTACTGCCTCCGTGGCCGCACAGCGAAGTTCAACTTTCCGGAGAATCCGCCGAAGATCGCCGGCGGAGGATCCCTCACTAGGTCGGAGATTCGAGCGGCAGCCGCCAAATTCGCAAATGAGGACTCTTCCACTGCCTCGACCAGCCACTCCAGTCACTCCATGCCCGAACTACAAGTGGAGTCTCCGTCGCCGTCGGTCTCCGGAGAAACGACCCAGGTGGAAACGGACAGTGAAATAAATTTGGAAGGGTCACTTTCAGAATTATTTACAAGCATAGGCTCCAATAGTTATGTGCCGGACTATGGAATATTTCCTGGATTTGATGATCTCTCAGACAATTTTTTCCCACCCGCAATGCCTACAGATGACTATGGAGAAGAAGACATGAATGCCCTTTTCTCTCACGACACATTCCTTTGGAATTTCTGA 618 0.5437 MVKKAIGVGSAPAESSDCRYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTAEKAARAFDAALYCLRGRTAKFNFPENPPKIAGGGSLTRSEIRAAAAKFANEDSSTASTSHSSHSMPELQVESPSPSVSGETTQVETDSEINLEGSLSELFTSIGSNSYVPDYGIFPGFDDLSDNFFPPAMPTDDYGEEDMNALFSHDTFLWNF* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0045 205 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Vvi11g0045 205 MobiDBLite consensus disorder prediction 102 142 - -
Vvi11g0045 205 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vvi11g0045 205 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Vvi11g0045 205 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Vvi11g0045 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 139 - -
Vvi11g0045 205 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vvi11g0045 205 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Vvi11g0045 205 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vvi11g0045 205 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Vvi11g0045 205 MobiDBLite consensus disorder prediction 100 142 - -
Vvi11g0045 205 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0045 Vvi-Chr11 646834 647451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0045 15 205 AP2-EREBP Transcription Factor Family AT1G19210 55.051 1.30e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi11g0045 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0045 - - vvi:100247370 412.149