Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0043 ATGAAAGCTCCACCAAATGGGTTTCTGGCAGGTTCTGGTGAAGGAGAAAGGAAGAGTATTAATTCTGAGTTGTGGCATGCTTGTGCGGGGCCCCTGGTTTCATTGCCTCCAGTTGGAAGTCTCGTGGTGTACTTCCCTCAAGGTCACAGTGAGCAAGTTGCTGCATCGATGCAAAAGGAGACTGAATGCGTACCAAGTTATCCTAATCTTCCTTCCAAGTTGATTTGCATGCTTCATAATGTCACATTACATGCTGATGCAGAAACTGATGAAGTTTATGCGCAGATGACCCTTCAGCCTGTAAGCAAATATGACAAGGAGGCATTGCTGGCATCTGATCTTGGCCTCAAGCAAAGCAGGCAACCAGTTGAGTTTTTCTGTAAAACTCTCACAGCTAGTGACACAAGCACCCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAGATCTTTCCACCTCTTGATTTCTCGATGCAACCCCCTGCTCAGGAGATTGTGGCCAGAGATTTACATGATAATACATGGACATTCAGACATATTTATCGAGGGCAACCAAAAAGGCACCTGCTGACTACAGGTTGGAGTGTCTTTGTTAGCACAAAAAGATTGTTCGCTGGTGATTCTGTCCTTTTTATAAGAGATGAAAAATCACAGCTTCTCTTGGGTATAAGGCGTGCTAATAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCCTGTGATAGCATGCATATAGGAATTCTAGCTGCTGCTGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATTTTATAATCCAAGGGCTAGCCCTTCTGAGTTTGTGATTCCCTTAGCCAAATATAACAAAGCAATGTATACCCAAGTTTCACTTGGCATGCGATTTAGAATGATGTTTGAAACTGAGGAGTCAGGGGTACGCAGATACATGGGTACCATCACTGGCATCAGTGAACTTGATGCTGCGCGATGGAAAAATTCACAATGGCGCAACCTTCAGGTTGGCTGGGATGAATCAACAGCTGGCGAACGGCCAAGCCGAGTTTCAATTTGGGAAATTGAACCTGTTGTAACTCCTTTCTATTTATGTCCTCCTCCATTTTTCAGACCCAAATTTCCCAAACAACCAGGATTTCCAGATGATGAGTCTGATATAGAGAGTGCTTTCAAGAGAGGCATGCCCTGGCTTGGGGATGACTTTGGCATGAAGGATGCCCCGAGCTCAATCTTCCCAGGCTTGAATCTAGTCCAGTGGATGAGCATGCAACAGAATAATCAATTTCCAGCTTCTCAGTCAGGACTATTCCCTCCCATGGTTTCTTCAACTGTCCTGCACAGTAACCTTAGCACTGATGATCCGTCCAAATTGTTGAGTTTTCAAGCTCCTGCGTTGTCTGCACCAAGTCTCCAGTTCAATAAAGTAAATCAACAAAATCAAGTTAGCCAATTCCAGCAGCCATCTTTGGCATGGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACAGCAACTGTTGCAGACTCCTATTAATCCACAACAACACCCCCAGCAGCATCAGCGCCAGCAGCAACAGCAGCCCCAGCAGCAGCATCAGCAGCAGCAACAACAACAACAACATCAACAACATCCACAGCAGCAGCAGCAGCACCAACTGCAACAATTGCAACAACCACAGCTGCTGCTGCAGCAGCACCAACAGTTGCAACCGCAGCAGCAACAACAGCAACAACAGCAGCAACAACCACAACATCAGCAGCAGCAGCAGCAGCAGCCACCACCACACCAGCAGCAGCATCAGCCACCACAGCAGCAGCAGCCGCTCCAACAGCTATTCCAACCAGCTTTTGTAAATGGTGGTGTTTCCTCAAATCAGATCCTTAATCAGAATTCACAGCAACCAATTTTATACCCTCAGCTTCAGCCACAACAGTCACTAACAGGCAATACCCTATCTCAACAAAGTATTCAGTCTGCTAGTAGGAATTCATTTCAGTTGTCATCTTTGCCACAAGACTTGCAGTTTCAGCAACAAATGGAACAGCAGCCTAGCCTTGTACAGAGGCATCAGCAGCCGCATACACAAATGCAACAATCATCCCCACAGTTGTTGCAACATAGCTCGTCTCAGAGGCCACAACAGCCACAGCAACCACAAGTGCAACAATCCTCACAGCAGAACCTACCAGAGCATCAACTTCAGTTACAGTATCTGCAGAAATTGCAGCAGCAGCAGTTGCTTTCTCCGGTAAGCCCACGGTTACAGCCTCAGCAGCCACAGCAACAGCAGGCAAATCAACAAAACCAGTCATTACAACATTTGTCTCTGTCTCAGCAGCAGCTAAGTAGCAATAGTTTCTCAACATCAGCGCTCATGCAATCACAACAAATTCCCATGAACCAACTCCAGGGCCAGCACAAACCAATTACAGCAATCAGAGCTCATTCTGGGCTTACAGATGGGGATGCTCCATCATGTTCAACCTCACCTTCTACTAATAATTGCCAGGTCCCATCAAATTTCCTCAATAGAAACCAACAAGGGCCAGCCATATTATTGGGGGATTCAGTGGTTGAGCCTGCTAGTAATCTTGTCCAAGAGCTTCAAAGCAAGTCTGATATCCGCATAAAAAATGAAGTACCCAGCTCAAAAGTACCAGACCAACTAAGATACAAAGGTACTGTTACTGATCAATTGGAAGCTTCTTCATCTGCGACGTCTTATTGCTTGGATGCTGGTACCCTCCAGCAGAATTTCACACTCCCCACCTTCTGTTTGGATGGAGATGTTCAGTCAAATCCTCAGAGTAATCCTCCTTTTGCAGTTAATATTGATGGTTTGACACCTGACACTCTGTTGTCGAGGGGTTTTGACTCAGGAAAGGATCTTCAGAACTTGCTTTCTAATTATGGTGGAACTCCAAGAGATATTGAGACGGAGTTGTCTACTGCTGCGATTAGCTCTCAGTCATTTGGGGTTCCGAACATGTCTTTCAAGCCTGGGTGTTCAAATGATGTTGCCATCACAGAGACTGGGGTTTTGAGCAATGGGTTGTGGACAAACCAGGCTCAGCGTATGCGGACATATACAAAGGTTCAAAAGCGTGGTTCTGTGGGGAGATCTATCGATGTCACTCGTTACAAAGGTTATGATGAGCTCAGGCATGATCTTGCCCGCATGTTTGGAATTGAAGGGCAGCTAGAAGATCCACAAAGGACCGACTGGAAGCTTGTTTATGTTGATCATGAGAATGACATACTACTTGTTGGTGATGACCCTTGGGAAGAGTTTGTAAGCTGTGTTCAGAGTATAAAGATACTGTCATCTGCTGAAGTACAGCAGATGAGTTTGGATGGAGATCTGGGTCACGTGCCTGTCCCAAATCAAGCTTGTAGTGGGACTGATAGTGGGAATGCATGGAAGGGTCACTACGAGGATACCTCAGCTGCCTCATTTAATCGATGA 3468 0.4619 MKAPPNGFLAGSGEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETECVPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPVSKYDKEALLASDLGLKQSRQPVEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISCDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISELDAARWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYLCPPPFFRPKFPKQPGFPDDESDIESAFKRGMPWLGDDFGMKDAPSSIFPGLNLVQWMSMQQNNQFPASQSGLFPPMVSSTVLHSNLSTDDPSKLLSFQAPALSAPSLQFNKVNQQNQVSQFQQPSLAWPQQQQQQQQQQLQQLLQTPINPQQHPQQHQRQQQQQPQQQHQQQQQQQQHQQHPQQQQQHQLQQLQQPQLLLQQHQQLQPQQQQQQQQQQQPQHQQQQQQQPPPHQQQHQPPQQQQPLQQLFQPAFVNGGVSSNQILNQNSQQPILYPQLQPQQSLTGNTLSQQSIQSASRNSFQLSSLPQDLQFQQQMEQQPSLVQRHQQPHTQMQQSSPQLLQHSSSQRPQQPQQPQVQQSSQQNLPEHQLQLQYLQKLQQQQLLSPVSPRLQPQQPQQQQANQQNQSLQHLSLSQQQLSSNSFSTSALMQSQQIPMNQLQGQHKPITAIRAHSGLTDGDAPSCSTSPSTNNCQVPSNFLNRNQQGPAILLGDSVVEPASNLVQELQSKSDIRIKNEVPSSKVPDQLRYKGTVTDQLEASSSATSYCLDAGTLQQNFTLPTFCLDGDVQSNPQSNPPFAVNIDGLTPDTLLSRGFDSGKDLQNLLSNYGGTPRDIETELSTAAISSQSFGVPNMSFKPGCSNDVAITETGVLSNGLWTNQAQRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDSGNAWKGHYEDTSAASFNR* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0043 1155 MobiDBLite consensus disorder prediction 567 595 - -
Vvi11g0043 1155 FunFam Auxin response factor 1023 1117 - -
Vvi11g0043 1155 MobiDBLite consensus disorder prediction 567 607 - -
Vvi11g0043 1155 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vvi11g0043 1155 MobiDBLite consensus disorder prediction 748 793 - -
Vvi11g0043 1155 Pfam AUX/IAA family 1025 1114 IPR033389 -
Vvi11g0043 1155 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vvi11g0043 1155 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi11g0043 1155 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vvi11g0043 1155 ProSiteProfiles PB1 domain profile. 1028 1121 IPR000270 GO:0005515
Vvi11g0043 1155 MobiDBLite consensus disorder prediction 647 666 - -
Vvi11g0043 1155 FunFam Auxin response factor 289 361 - -
Vvi11g0043 1155 Gene3D - 1023 1117 - -
Vvi11g0043 1155 FunFam Auxin response factor 124 228 - -
Vvi11g0043 1155 Gene3D - 289 360 - -
Vvi11g0043 1155 MobiDBLite consensus disorder prediction 512 554 - -
Vvi11g0043 1155 SMART B3_2 126 228 IPR003340 GO:0003677
Vvi11g0043 1155 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1117 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g0043 1155 Gene3D - 123 227 IPR015300 -
Vvi11g0043 1155 SUPERFAMILY CAD & PB1 domains 1043 1106 - -
Vvi11g0043 1155 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vvi11g0043 1155 MobiDBLite consensus disorder prediction 676 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0043 Vvi-Chr11 629738 639662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0043 1 483 B3 DNA Binding Superfamily AT1G19220 81.781 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi11g0043 AUX_IAA 1.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0043 K14486 - vvi:100257618 940.643