Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0042 ATGGATAGAAGGAAAAGAACAACAGAAGAGGAGATGAAGAAGACGAAGCAGAATAGCTACAATGGAGAAAGCGAAATCTTCGCTTCTTGCTCTTTCTCCAGCCTCGGTCTTCACCCTACCTTGTGTGATCAGCTCCGAGAAAGGATGGGGTTCGAAGTTCCGACCATCGTCCAGGCAGAAGCAATTCCAGTAATTCTCGCTGGGCGTCATGTACTTGTTAATGCTGCTACTGGCACTGGGAAAACTATTGCATACTTGGCTCCTGTTATTAATCATTTACACAAGTATGATCCTCGAATTGAGCGGTCAGCTGGAACTTTTGCGTTGGTTCTTGTACCAACGCGGGAGTTGTGCATGCAGGTTTATGAAATCTTGCAGAAGTTATTGCATCGGTTCCATTGGATTGTCCCAGGGTACGTGATGGGTGGTGAAAACAGGTCAAAAGAGAAAGCCAGGCTGCGCAAAGGCATATCTATTCTCGTTGCAACTCCAGGACGTCTTCTGGATCACTTAAAAAATACATCATCCTTCTTGCACACAAATTTGAGATGGATAATCTTTGATGAAGCAGATAGGATTCTGGAGTTAGGATTTGGTAAAGAAATAGAGGAGATACTAGATCTTTTGGGTTCAAGGACAAATGGGCCTACTATCAGGGAGGATGCAGTTACTTCAGAATTTCAGAGGCAGAATTTACTGTTATCAGCTACTTTAAATGAAAAAGTAAACCATCTTGCTCAAATTAGTTTAGAAAATCCAGTTACAATTGGTCTTGATGGCAAGAAGATGCAACCAAAACCACCGCTTGAACATTTTGGGTCTGTTGAATTTGATGTGGATGAAGACTCAGAAAAGTTACACAAAATAATAAGCCCATCAAATGGGGATTATAAACTTCCAGCTCAATTAGTTCAGAGATATGTGAAAGTGCCCTGTGGTTCACGGCTAGTGGTGCTTCTTTCCATTTTAAAGCATCTTTTTGAGAGAGAAGCTTCCCAAAAGATTGTGGTATTCTTTTCGACATGCGATGCAGTAGATTTCCACTATTCACTGTTCAGTGCATTCCTGTGGCCAGCCAATTTACATCCAGAAACAGAAGATAGACAGATGTTTTTGAGATTCAAAACATTTCAGTTGCATGGAAACATGAAGCATGAAGATCGAAGAACCACCTTTCAGACCTTCAAAAAGGAGAAATCAGCTCTTCTCTTGTCTACAGATGTTGCTGCTAGGGGCCTGGATTTTCCAAAAGTTCGTTGTATCATACAGTATGATTCTCCAGGGGAGGCTAGTGAATATGTCCATAGGGTTGGAAGAACTGCACGGTTGGGAGAAAGGGGAGATTCTTTGTTATTTCTACAACCAGTTGAAATGGATTATTTGCAAGACCTAGAGAAACATGGTGTATCTCTGACAGAGTATTCACTTCTGAAAGTGTTAGATAGTTTCCCATTGTCTGGTCAGAAGCACCATATCAAGAAGTTTATTTCGTTAGAGATGCATCCGTGGTCGCTTTATTTGCAGAAGGCACTAGAATCCTTCATCTTTGCTGAGCCCAAGATGAAGAAGCTGGCCAAGGATGCATTTTGCTCTTGGGTCCGTGCATACACAGCCCACCGTGGTGAGCTGAAAAGAATTTTTCAGGTGAAAAAACTTCATCTGGGGCATGTGGCAAAGAGCTTTGCATTGAAGGACCAACCCTCCTTGGTTGGAAAATCAATGCAAATGCAAACAAAAAAGAGGAAAAGAGATCAGAAACAACAGGGACTGTCCAAAAGGAAGAAGCTTGCTAGAAAAACATGA 1803 0.4193 MDRRKRTTEEEMKKTKQNSYNGESEIFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAEAIPVILAGRHVLVNAATGTGKTIAYLAPVINHLHKYDPRIERSAGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDLLGSRTNGPTIREDAVTSEFQRQNLLLSATLNEKVNHLAQISLENPVTIGLDGKKMQPKPPLEHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVKVPCGSRLVVLLSILKHLFEREASQKIVVFFSTCDAVDFHYSLFSAFLWPANLHPETEDRQMFLRFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARGLDFPKVRCIIQYDSPGEASEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGVSLTEYSLLKVLDSFPLSGQKHHIKKFISLEMHPWSLYLQKALESFIFAEPKMKKLAKDAFCSWVRAYTAHRGELKRIFQVKKLHLGHVAKSFALKDQPSLVGKSMQMQTKKRKRDQKQQGLSKRKKLARKT* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0042 600 Pfam DEAD/DEAH box helicase 57 244 IPR011545 GO:0003676|GO:0005524
Vvi11g0042 600 Gene3D - 1 259 IPR027417 -
Vvi11g0042 600 Gene3D - 313 597 IPR027417 -
Vvi11g0042 600 SMART DUF4217_3 506 571 IPR025313 -
Vvi11g0042 600 SMART helicmild6 366 444 IPR001650 -
Vvi11g0042 600 SMART ultradead3 50 272 IPR014001 -
Vvi11g0042 600 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
Vvi11g0042 600 MobiDBLite consensus disorder prediction 585 600 - -
Vvi11g0042 600 PANTHER RNA HELICASE 15 575 - -
Vvi11g0042 600 CDD DEADc_DDX31 41 257 - -
Vvi11g0042 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 476 IPR027417 -
Vvi11g0042 600 CDD SF2_C_DEAD 303 453 - -
Vvi11g0042 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 256 IPR027417 -
Vvi11g0042 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 30 59 IPR014014 GO:0003724
Vvi11g0042 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 491 IPR001650 -
Vvi11g0042 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 256 IPR014001 -
Vvi11g0042 600 Pfam Helicase conserved C-terminal domain 321 444 IPR001650 -
Vvi11g0042 600 Pfam Domain of unknown function (DUF4217) 508 568 IPR025313 -
Vvi11g0042 600 MobiDBLite consensus disorder prediction 569 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0042 Vvi-Chr11 613386 619686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0042 15 466 Eukaryotic Initiation Factors Gene Family AT1G72730 25.597 2.65e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0042 K14806 - vvi:100250946 1179.47