Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0039 ATGGCTCTCCCTCCTCTCTTCGCCGTCGTTTTCGTTCTAGCGACGCTCTCCTCCACCTTCGCAGAAGATCTCGTCCATTCATCTTGCATACACGCAAGTTATCCGAACATCTGCCTCCGGACACTCTCGTCGTACTCCGGCCCCGCCAAAACTCCTCGGGATCTAGCTCAAGCCGCCGTGAAGGTAAGCCTCTCTCGGGCCCAGCGAGTATCGACGTACCTGAACGGAGTGGCCGGCCAAGGAAAGGCAAGCAAGAGAGAGCAAGTGGCGTTGAGTGACTGCGTGGAGCAGATATCGGACACAGTGGAGGAGCTGAGCAACACTCTGAAGGAGCTGAAGCACCTCCGCCCCGGAACCTTCCGGTGGCAGATGAGCAATGCGGAGACGTGGGTGAGCGCCGCTCTAACGAACGAGGACACGTGTCTTGACGGATTCCAGGGCGTGGATGGGAAGGTGAAGGCGGATGTGAAGCGCAAGATCACGAACGTCGCTAGGGTTACGAGCAACGCTCTCTATCTCATCAATCGCCTCGATTCGACACGTGGCAGGGCCGGACTCGAGCCGTGA 567 0.5855 MALPPLFAVVFVLATLSSTFAEDLVHSSCIHASYPNICLRTLSSYSGPAKTPRDLAQAAVKVSLSRAQRVSTYLNGVAGQGKASKREQVALSDCVEQISDTVEELSNTLKELKHLRPGTFRWQMSNAETWVSAALTNEDTCLDGFQGVDGKVKADVKRKITNVARVTSNALYLINRLDSTRGRAGLEP* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0039 188 Coils Coil 95 115 - -
Vvi11g0039 188 CDD PMEI-like_3 27 179 - -
Vvi11g0039 188 SMART PMEI_2 20 173 IPR006501 GO:0004857
Vvi11g0039 188 FunFam Pectinesterase inhibitor 3 20 178 - -
Vvi11g0039 188 Pfam Plant invertase/pectin methylesterase inhibitor 23 172 IPR006501 GO:0004857
Vvi11g0039 188 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 179 IPR035513 -
Vvi11g0039 188 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 173 - -
Vvi11g0039 188 NCBIfam pectinesterase inhibitor domain 7 177 IPR006501 GO:0004857
Vvi11g0039 188 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 177 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0039 Vvi-Chr11 583511 584077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0039 24 180 Carbohydrate Esterase AT3G14310 30.675 5.15e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0039 - - vvi:100267888 370.163