Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0031 ATGCATTTGGGCGCTGTGACGACGCTGCTGCTGGCGTCGCAGTTCATGATTTTCATCCCAGCCGTCGTCTCCGACAAAACCAAGCACATTCCCTCCGATACCTCCAAGCTAGACGCCTGGATCGCCACCAACATCCGGGAATACCGGCAGCGAATATGGGAGAGCAAAAAGGGCCTGCACTCATCTCTCGATCCTATACTCGTCGCCGCCGAGGCAGAAGTGAATGTGATCAAGGTCAGAAAAGATGGCACCGGCGATTTCAAGACGATCACCGACGCTCTCAACAGCATCCCCAAGGGCAACCTCAAGCGCACCGTCATATGGATCGGCGGCGGCGAGTACTGGGAGAAGATCACCATTGATCGGTCCAAGCCGTTCATCACTTTGTACGGATCGACGGCTGATATGCCGTCGATAACGTACGACGGAACGGCGTTCAAGTACGGAACAGTCGACAGCGCCACCGTGGCGGTTGAGTCGGACTACTTCATGGCCGTTAATATTGCATTTGTGAATTCAGCTCCTATGCCAGACGGAAAAAGGGTGGGAGCTCAGGCAGTGGCCATGAGGATCTCCGGCGACAAAGCAGCATTCCACAACTGCATGTTCATAGGGTTTCAAGACACCCTTTGTGACGACAGGGGCAGACATTTCTTCAAGGACTGCCAAATCCAGGGCACCGTTGATTTCATCTTTGGGGACGGCAAATCACTCTACTTGAACACAATGATACAATCAGTTGCAAAGGGCGTGGGCGTGATCACAGCTCAGGCAAGGGAAAACGTGGCTGATACCAGCGGATTCGCCTTCGTCCACTGCAACATATCCGGCAGCGGAGACACTTATCTCGGCCGAGCATGGAGGTTGAGGCCCAGAGTGGTGTTTGCTTACACCTACATGGGCACTCTCATCAACGGCGAAGGTTGGTCGGATAACTTGCATGCTGATCGTGACAAGACTGTATACTATGGGGAGTACATGTGCGAAGGACCAGGAGCAACCCCGTCTGGCCGAGTTAAATTTGCGAAGTTACTGACTGGTGAAGAAGCAAAGCCCTTCTTGAGCATGACCTACATCAATGGCAACAAGTGGCTTCTGCCACCTCCCAATTATGTGTAG 1119 0.5317 MHLGAVTTLLLASQFMIFIPAVVSDKTKHIPSDTSKLDAWIATNIREYRQRIWESKKGLHSSLDPILVAAEAEVNVIKVRKDGTGDFKTITDALNSIPKGNLKRTVIWIGGGEYWEKITIDRSKPFITLYGSTADMPSITYDGTAFKYGTVDSATVAVESDYFMAVNIAFVNSAPMPDGKRVGAQAVAMRISGDKAAFHNCMFIGFQDTLCDDRGRHFFKDCQIQGTVDFIFGDGKSLYLNTMIQSVAKGVGVITAQARENVADTSGFAFVHCNISGSGDTYLGRAWRLRPRVVFAYTYMGTLINGEGWSDNLHADRDKTVYYGEYMCEGPGATPSGRVKFAKLLTGEEAKPFLSMTYINGNKWLLPPPNYV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0031 372 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 365 - -
Vvi11g0031 372 SUPERFAMILY Pectin lyase-like 75 365 IPR011050 -
Vvi11g0031 372 Pfam Pectinesterase 78 362 IPR000070 GO:0030599|GO:0042545
Vvi11g0031 372 Gene3D - 72 367 IPR012334 -
Vvi11g0031 372 ProSitePatterns Pectinesterase signature 2. 224 233 IPR033131 -
Vvi11g0031 372 FunFam Pectinesterase 72 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0031 Vvi-Chr11 522052 524349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0031 3 369 Carbohydrate Esterase AT1G69940 51.762 1.26e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0031 K01051 - vvi:100244050 761.911