Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0028 ATGGAGTCCACCACCGTAATCAAGAAATTCCATGAACCCCCCAAGGATCTCACAAGGACCCGACTTATGACCATTGTACTTGGGGTCTTTCTCACACTCCCAACACTAATTCTCTTTGCTTCATTTCTCAACGAGGAAGGAGACCAAGAACTGGTCCGTTCTTCAACTCAACCTCAACCTCTTCATCCACTCATCAAGAACGCCTGCACCAACACTCTCTACCCTTCTCTCTGCTTCACCACTCTCTCTTCTGCTCCTGCTACTTCCAAGAACACCACCACCCTCCACCATATTCTTGAGATTGCAGTCAATGCAACGGTGAGCTCCGTGATGGATTCTGGGTCCGATATTAAAGCCCTTTTCACCTACCAAGACTTGAATTCTCAAGAGAAGAATGCTCTGAATGATTGCATGGAAATGACAGACCAAACCCTCTATGAACTTGGACAGGCCATTGACGACCTGCATGCTTTCCCGCCATCTATAGGGGATCCTCATCGGTTATACACGAACCTTAAGACCCTTCTCAGTGCAGCCATGACAAATGAGAACACATGCATCGATGGATTCACTGACCTGGAAGAAGCCGATTCTGAAAGCCAGAAGGGTCTCAAGGGACATCTCCAATCCGTCTTAACTCCTATTTCTGGTATGATCAGCAACTGCTTGGCCATTATCAAGTACATGGAAACCATAGCCCTTAGGGACAGAAAGATCATGAATACCACAATGCCAAGGGACGAATTCCCAGCATGGATGACAGCCATTGATCGGAAACTGATTGAAATGGTGCCTAAAATAAGGCCAGACATCGTTGTTGCAAGTGATGGCAGTGGACATTTTAGCACCATTGGGGAAGCAATCAGTACGGCGCCTAACAAGAGCAGTAATCGATTTGTGATTAAAATAAAGGCAGGAGTATACAAGGAAAATGTGGAGATTCCAAGGGAAAAGGTCAATATCATGTTGGTAGGAGAAGGGATGAATTCAACAGTGATCACAGGGTCTAAAAGCTTTGTTGATGGGTTTTCCACCTTCACTTCAGCCACCTTAACTGTGGTTGGAGACAAGTTCTTAGCAAGGGACCTAACCATCATCAACACGGCAGGCCCCGAGAAGCACCAGGCAGTTGCAGTAAGAGTGACCTCCAATTCTGCTTTCTACCGCTGCAACTTCAGCTCGTATCAGGACACCCTCTACGCTCATTCTCTCCGCCAATTCTATCGTGAATGCACAATCCAAGGCACAATAGATTTCATCTTTGGAAATGCAGCAGCAGTCTTCCAAAACTGTCTTATACTCGTTCGCAAACCAAGCCCCGGACAAAAGAACATGATCACTGCTCAAGGGAGAGGAGACCCAAATCAGAACACTGGCATCTCATTACAAAACTGCACCATAGTAGCTGCACCAGAATTCCCTTTGGCTGAGAGACGAAACTTTTTGACTTTCCTGGGTCGCCCATGGAGGAACTACTCAAGGACTATGGTCATGAAGAGCTACTTAGGAGATCTGATAAACCCACAGGGTTGGTACAAATGGAATAAGTATAGCACTTTAGACACTGTGGAGTACATTGAATACCTGAACTTTGGACCAGGATCAGACACAAGGCACAGAGTCACATGGGGTGGCTACAGAAAGAACTGCAGTGAAGACATAGCCAAGCAGTTTACAGCTGAAGTTTTTCTACATGGAGCCAGTGAGTGGTTAGAGTCCATTGGTTTTCCCCTAGTTCATGGCTCATAA 1749 0.462 MESTTVIKKFHEPPKDLTRTRLMTIVLGVFLTLPTLILFASFLNEEGDQELVRSSTQPQPLHPLIKNACTNTLYPSLCFTTLSSAPATSKNTTTLHHILEIAVNATVSSVMDSGSDIKALFTYQDLNSQEKNALNDCMEMTDQTLYELGQAIDDLHAFPPSIGDPHRLYTNLKTLLSAAMTNENTCIDGFTDLEEADSESQKGLKGHLQSVLTPISGMISNCLAIIKYMETIALRDRKIMNTTMPRDEFPAWMTAIDRKLIEMVPKIRPDIVVASDGSGHFSTIGEAISTAPNKSSNRFVIKIKAGVYKENVEIPREKVNIMLVGEGMNSTVITGSKSFVDGFSTFTSATLTVVGDKFLARDLTIINTAGPEKHQAVAVRVTSNSAFYRCNFSSYQDTLYAHSLRQFYRECTIQGTIDFIFGNAAAVFQNCLILVRKPSPGQKNMITAQGRGDPNQNTGISLQNCTIVAAPEFPLAERRNFLTFLGRPWRNYSRTMVMKSYLGDLINPQGWYKWNKYSTLDTVEYIEYLNFGPGSDTRHRVTWGGYRKNCSEDIAKQFTAEVFLHGASEWLESIGFPLVHGS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0028 582 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Vvi11g0028 582 Gene3D - 264 581 IPR012334 -
Vvi11g0028 582 FunFam Pectinesterase 61 230 - -
Vvi11g0028 582 SUPERFAMILY Pectin lyase-like 267 578 IPR011050 -
Vvi11g0028 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 230 IPR035513 -
Vvi11g0028 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 229 IPR035513 -
Vvi11g0028 582 CDD PMEI-like_3 68 229 - -
Vvi11g0028 582 SMART PMEI_2 60 225 IPR006501 GO:0004857
Vvi11g0028 582 Pfam Plant invertase/pectin methylesterase inhibitor 64 225 IPR006501 GO:0004857
Vvi11g0028 582 Coils Coil 123 143 - -
Vvi11g0028 582 Pfam Pectinesterase 270 566 IPR000070 GO:0030599|GO:0042545
Vvi11g0028 582 PANTHER PECTINESTERASE 38 572 - -
Vvi11g0028 582 FunFam Pectinesterase 264 582 - -
Vvi11g0028 582 NCBIfam pectinesterase inhibitor domain 60 228 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0028 Vvi-Chr11 496054 497941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0028 40 578 Carbohydrate Esterase AT1G53830 45.796 2.52e-162 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0028 K01051 - zju:107409045 748.814