Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0025 ATGGGAATTCCCAAACAGCAGCCGCAGCAGCAGTACACGGTGGAGCAACTACTCGCTCTCAATCCCTACAATCCCGATATCCTTCCCGATCTTGAAAACTTCGTCAACGAGCAGGTGTCTTCACAAACATACTCCTTGGATGCAAATCTTTGCCTTCTTCGCCTCTACCAATTTGAGCCAGAGCGAATGAGTACCCAAATCGTTGCTCGGATTTTGGTGAAGGCCCTTATGGCAATGCCAGCTCCAGATTTCAGCCTTTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGAACAGTTCAAGACTTTGATTGTTCTCTCACATTATTTGGAGACAGCAAGGTTCCGTCAGTTCTGGGATGAAGCGGCTAAGAATCGACACATAGTTGAAGTTGTTCCAGGTTTTGAGCAAGCAATCCAAGCCTATGCCATTCACGTTCTTTCCTTGACTTATCAAAAGGTTCCTAGGACTGTACTTGCTGAGGCTATCAACATTGAAGGTCTATCTCTAGATAAATTCCTAGAGCATCAGGTAGCTAACTGTGGTTGGGTTCTTGAGAAGAGTCAAGGCAAGGGCCAACTTATTGTCTTGCCTCCTAACGAGTTCAACCATCCTGAACTGAAGAAAAACGCTGCAGATAGTATTCCTCTAGAGCATATCACCCGAATCTTCCCCATTCTCGGCTGA 690 0.4565 MGIPKQQPQQQYTVEQLLALNPYNPDILPDLENFVNEQVSSQTYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETARFRQFWDEAAKNRHIVEVVPGFEQAIQAYAIHVLSLTYQKVPRTVLAEAINIEGLSLDKFLEHQVANCGWVLEKSQGKGQLIVLPPNEFNHPELKKNAADSIPLEHITRIFPILG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0025 229 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 5 229 IPR009374 GO:0003743|GO:0005737|GO:0005852
Vvi11g0025 229 Pfam CSN8/PSMD8/EIF3K family 64 190 IPR033464 -
Vvi11g0025 229 Gene3D ARM repeat; domain 1 5 122 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Vvi11g0025 229 FunFam Eukaryotic translation initiation factor 3 subunit K 125 228 - -
Vvi11g0025 229 FunFam Eukaryotic translation initiation factor 3 subunit K 6 122 - -
Vvi11g0025 229 SUPERFAMILY "Winged helix" DNA-binding domain 134 226 IPR036390 -
Vvi11g0025 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 5 226 IPR009374 GO:0003743|GO:0005737|GO:0005852
Vvi11g0025 229 Gene3D - 125 227 IPR036388 -
Vvi11g0025 229 SUPERFAMILY ARM repeat 7 132 IPR016024 -
Vvi11g0025 229 ProSiteProfiles PCI domain profile. 44 202 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0025 Vvi-Chr11 443482 447291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0025 1 229 Eukaryotic Initiation Factors Gene Family AT4G33250 77.922 7.40e-134 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0025 K15028 - vvi:100259495 459.144