Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0020 ATGGAGGCGATGAAGCTGGAGAGACCTGTAGTTGAGATAGTGGATATGGAGGAAGAAGATGCTGAAGAACAAGTGTCGTTGTTTTTGACACCCATATCTTGCAGGGGAGGCACCAGGAACACTGCAATCTCCGTCGAGCAATACTCTGCTGACAAAGAACTCTATCTCTCCATCAAAGCTTCTCTCCTTCAACCCCAAACCCCTCTCATCCACCTCGACAACGACGATGATGATGATGATCTGCAAATTCTGGGCATAAACCCCCCCACAACCCCACATGCATTCTCCACGAGAAAACCCTTTACTTTTCCTTCTGTTACTGAAACAGGGCAGCCCTCCAATTCCAAACCAGACCCTCCTCCAACCTTCGTTTGTGAAATCTGCATTGACCCCAAACCCCTAAACCACTCCTTCAGCATCAAGGGCTGCCCCCACTCTTACTGCTCCGACTGCATGACCAAATACGTGGCCTCTAAACTTCAAGACAACGTTTCCCGGATTTCTTGCCCCGCACCCAACTGCACCGGAGTGCTAGAGCCCCAGCAGTGTCGTCCCATCCTCCCATCCCATGTGTTTGATCGCTGGGGAAATGCTTTATGCGAGGCTCTCATTCTTGGGTCTCAAAAATTCTACTGTCCTTACAAGGATTGTTCTGCTCTGTTAATCAGAGATGAAGGAGAGGTCATTAAAGAGTCTGAGTGCCCCAATTGTAGGAGGCTCTTCTGCGCCCAGTGTGAGGTTCCTTGGCATTCTGGGATTGATTGTGGGGAGTTTCAGAAATTGAACAAGGATGAAAGAGGGAGAGAGGACATTTTGATGATGAATCTTGCCAAGACCAATAACTGGAAGAGGTGCCCCAAGTGCAAGTTCTACGTTGAGAAATCATTTGGTTGCATGTATATCAGGTGCAGGTGTGGATTTGCTTTCTGTTACAACTGTGGAGCTCCCTCATCTACCATCTCCCATATATGTCCCCATTGTCGGCATTAA 990 0.4838 MEAMKLERPVVEIVDMEEEDAEEQVSLFLTPISCRGGTRNTAISVEQYSADKELYLSIKASLLQPQTPLIHLDNDDDDDDLQILGINPPTTPHAFSTRKPFTFPSVTETGQPSNSKPDPPPTFVCEICIDPKPLNHSFSIKGCPHSYCSDCMTKYVASKLQDNVSRISCPAPNCTGVLEPQQCRPILPSHVFDRWGNALCEALILGSQKFYCPYKDCSALLIRDEGEVIKESECPNCRRLFCAQCEVPWHSGIDCGEFQKLNKDERGREDILMMNLAKTNNWKRCPKCKFYVEKSFGCMYIRCRCGFAFCYNCGAPSSTISHICPHCRH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0020 329 FunFam RBR-type E3 ubiquitin transferase 120 206 - -
Vvi11g0020 329 Pfam IBR domain, a half RING-finger domain 206 255 IPR002867 GO:0008270
Vvi11g0020 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 204 IPR013083 -
Vvi11g0020 329 SUPERFAMILY RING/U-box 200 260 - -
Vvi11g0020 329 Gene3D - 252 329 - -
Vvi11g0020 329 CDD BRcat_RBR_unk 206 258 - -
Vvi11g0020 329 ProSiteProfiles Zinc finger RING-type profile. 125 173 IPR001841 -
Vvi11g0020 329 SMART ibrneu5 193 255 IPR002867 GO:0008270
Vvi11g0020 329 SMART ibrneu5 265 327 IPR002867 GO:0008270
Vvi11g0020 329 CDD Rcat_RBR_unk 281 316 - -
Vvi11g0020 329 ProSitePatterns Zinc finger RING-type signature. 143 152 IPR017907 -
Vvi11g0020 329 FunFam RBR-type E3 ubiquitin transferase 257 329 - -
Vvi11g0020 329 ProSiteProfiles TRIAD supradomain profile. 121 329 IPR044066 -
Vvi11g0020 329 SUPERFAMILY RING/U-box 266 326 - -
Vvi11g0020 329 SUPERFAMILY RING/U-box 120 202 - -
Vvi11g0020 329 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 80 323 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0020 Vvi-Chr11 404959 407256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0020 125 316 C3H Transcription Factor Family AT2G19610 32.178 1.52e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0020 K11975 - vvi:100252570 689.493