Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0019 ATGGATGAGTATCTGGATCACTTGTTTTCATCCACATCATGGTCAGATGTGAATGTGAAGGAGGGATCATCTTGGATTTGTGGTGAGCCTAGCCAAACAAATGGGATGCTTTCAGATTCAATTGGAATATATGAAGGTGATAAAAAAAACTCACCTGTTGGCATGACTAATTCAAACCTTATGATCGAGGGCTTGGTTACTCAAGATACTTCATCTATTGTTCTTGGTGGAGAGTCTGATCATGGTCTTGGCAAGGGCTTACTTTTGGAAGAAGCTCCACGGCAGCAAGACCTTCAAAACACTGAAGGCAATTCCTCCTTGAATGGAGCAGTGAATGGCAGCTCAGAAGTTGGATACGTGGGCCTGCAACTAAATACTCCTACTTCAACCCCATGCTCACTGGATCTTGGCTCTCCCAAGCAGCTTTCGCTGATTGGTGGCATGTCTAGGTCATCTCGTCCTTTCACTGAGCTGGATCATGTTGGGTGCAATGGTAATGAGCCATCTGATTTTCAGAGATCAGTTGGAAATTTTCAAGCATTGCCTCCAATTCCACAGTTGTGGTCTCAACCATCTTACGGGGGTGGTTCCTCCTTGTCTCCTGTTATGGGAGAATACAAGATGCAGGGCTTTGGTCTGCAAGGAGAATATGTGGATAATGAAATGGATATCATGAGGAACAGATACGTTGGGGATGAAATTCTGCAACTTGATAACATTTCTTCAGCAATCCCCATAAAGGGGAAAGAAGAGCAGCACACTCATCCTTTCTCTCCTTCTGCGGTTGGGCCCCACATGACAATGACAGCATCTGGATTACAGTCTTTGCCACAGACTACGGTAGGTACTGCTTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATTGCTGAAAGGATGAAGAACCTGCAAGAACTTGTTCCCAATTCCAATAAGACGGACAAAGCATCTATGCTCGACGAAATCATTGAGTACGTCAAATTTCTTCAGCTCCAGGTCAAGGTACTAAGCATGAGTAGGCTGGGGGCAGCAGAGGCAGTTGTTCCTCTCATCACAGATGGCCAAGCTGAGGTGCTATACCCTTCTCTTTCTGGCTCTAAGGGTCTGTCACTTTCACCCTCGGCTGGTCAAGCTGAAGATATTTGTCAATCTCCTGATCAAATTGCCTTTGAGCAAGAAGTAGTGAAGTTGATGGAGTCCAACGTGACCATGGCCATGCAATATCTTCAAAGCAAAGGTCTCTGCCTTATGCCAATTGCTCTTGCTACAGCCATATCCAGTGGAAAGGCAGCATCATCAGGTACTGGGTCCGATGAGGGAAAGAACGGTTTGATTGGTGGATTCATTCCCAATAATAACAGTAGCAGCAACACCAGTAGCAGCAACACCAGTAGCAACAGCTTACCTGGCATTGGGACACATCATACATCTTCTGATGGCAATGTTCTGATTGGAAAACTCAGCAGAGAAGGCATCACCACCAGTAGTTGCAATGGGGCTATTAACAAACAAGAAGAGTTGAAGAGCACCTCATGCACTGCAAGAGAACTGAAAGCCAAAACTTAA 1632 0.4596 MDEYLDHLFSSTSWSDVNVKEGSSWICGEPSQTNGMLSDSIGIYEGDKKNSPVGMTNSNLMIEGLVTQDTSSIVLGGESDHGLGKGLLLEEAPRQQDLQNTEGNSSLNGAVNGSSEVGYVGLQLNTPTSTPCSLDLGSPKQLSLIGGMSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGPHMTMTASGLQSLPQTTVGTASGGCNGTGKPRVRARRGQATDPHSIAERLRREKIAERMKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEVLYPSLSGSKGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAISSGKAASSGTGSDEGKNGLIGGFIPNNNSSSNTSSSNTSSNSLPGIGTHHTSSDGNVLIGKLSREGITTSSCNGAINKQEELKSTSCTARELKAKT* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0019 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Vvi11g0019 543 Pfam Helix-loop-helix DNA-binding domain 307 352 IPR011598 GO:0046983
Vvi11g0019 543 MobiDBLite consensus disorder prediction 452 502 - -
Vvi11g0019 543 SMART finulus 308 357 IPR011598 GO:0046983
Vvi11g0019 543 FunFam Transcription factor bHLH66 299 364 - -
Vvi11g0019 543 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 144 447 - -
Vvi11g0019 543 MobiDBLite consensus disorder prediction 469 502 - -
Vvi11g0019 543 Gene3D - 299 369 IPR036638 GO:0046983
Vvi11g0019 543 MobiDBLite consensus disorder prediction 284 306 - -
Vvi11g0019 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 300 363 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0019 Vvi-Chr11 396821 400719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0019 251 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 58.768 1.41e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi11g0019 HLH 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0019 - - vvi:100257707 1033.09