Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0018 ATGATGTTCCATGTTCAAGCTGCTTCAAGAAATCACTGTGCTCTCCTCGCAGTTGTGTGCGGCAAAATCCCTGTTTCTGAGGATCAACAACAGCATCCATATCCCTTCCCGGAACTTGTTTCTTCCGGCCGCCTTGAGGTTCAGATTCTGAAAAATCCTAGTATCCATGAGTTTCAACGGTCACTTGAATCGTTGGAGCCAAATTTCCTTTACTTGCAAGGGGAGCAGCTTCCGGGTAGTGAAGAAATAGGATCTCTGACATGGGGAGGGGTGGACTTGTCCTCTGCAGAGGCGTTAGTTGAACTCTTTGGTCCCACATTGCCCACAACTGTTTATCTAGAGACCCCAAATGGTGAAAAATTAGCAAAGGCACTTCATTCTAAGGGTGTTTCTTATGTAATATATTGGAAAAATGCATTTTCTTGCTATGCAGCTTGTCATTTTCGTCAAGCACTGTTCTCTGTGGTGCAAAGTTCATGCAGCCATACGTGGGATGCATTCCAGCTTGCCCATGCATCCTTTAGGCTCTATTGTGTGCAAAACAACACCGTACCTTCCAACAACCAGAAAGTTAGTGGTAAGCTTGGACCCTGCCTTCTTGGAGACCCTCCCAAGATTAATGTTGTTCCTCCTGAGGTTGACGAGGAGGAAAGCTTGCCTGCAACTCTTCCTGTTATAAAGATATATGATGCTGATGTGAGCATGAGGTTTCTTGTTTGTGGAGCACCAAGCGCATTGGATGCATGTTTACTGGGATCTTTGGAGGATGGCCTCAATGCCCTCCTGTGCATTGAAATTCGCGGGAGTAAACTTCATAATCGTGTGAGTGCTCCACCACCACCTCTTCAAGCAGGGACATTTTCTCGTGGCGTAGTGACCATGCGATGCGACTTATCAACCTGTAGTTCTGCCCATATATCACTTTTAGTGTCTGGTAGTGCCCAGACTTGTTTAAATGATCAGCTGTTGGAGAGTTATATCAAGAATGAGCTTATTGAGAAGAGTCAGTTAGTCCATGCAGTACCCAGCTGTGAGGAAAGCAAATTGTCTTCATCTGAGCCTCGGAGGTCTGCATCAATAGCTTGTGGGGCTAGTGTATTTGAAGTTCGTATAAAGGTTCCAACATGGGCTTCACAGGTTTTGAGGCAGCTAGCACCAGATGTATCTTATCGCAGCTTAGTCACCCTGGGAATAGCTAGCATTCAAGGTTTATCTGTTGCTTCCTTTGAAAAAGATGATGCTGACCGCCTCCTCTTCTTTTGTACAAGGCATGCCAAACAACTCAATCAAAACAATTCTATTCTTCCTAGGCCTCCTAGCTGGTTAATAGCTCCTCCAGCTAGTCGGAAAAGGTCTGGGCCATGCCATGAAACCAAACCATCTGGATATAAAGTCTTGGGAGGTGTAAATGGAGGTGTTCTTCAACAGAAACCAAAGATTGCTGCAATGAGGCCAATTCCCCACACTCGCAATCATAAAATGCTGCCTTTTTCTGGAATTTCTGAGGCCAGCAGGTGTGATGGAGACCAAGCAAAGGGTAACTTGTCAGTTGTTCCAGCAAAGCACAATGGCACCACACCTGTCACACATCGCAAATTGTTGTCAAGCTCTTTCCAGGCCCAGCAGATTATTTCTTTGAACCCTCTACCTCTAAAGAAGCATGGTTGTGGCAGATCACCAATTCAGATTTGCTCAGAAGAGGAATTTCTCAGGGATGTAATGCAATTTTTGATTCTCCGAGGGCATACCCGCCTTGTCCCTCAAGGGGGGCTGGCTGAATTCCCTGATGCTATACTTAATGCAAAACGCCTTGACCTTTACAACTTGTATAGAGAGGTGGTTTCAAGGGGAGGCTTCCATGTAGGGAATGGCATCAACTGGAAAGGACAAGTTTTCTCAAAGATGCGAAATCACACATTGACTAATAGAATGACAGGTGTTGGGAATACTCTAAAAAGACATTATGAAACCTATCTTTTAGAATATGAATTAGCCCATGATGATGTAGATGGGGAATGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAATTGTGGAATATGTGGTGAATGGGCTCATTTTGGGTGTGATCGGCGCCAGGGTCTTGGTGCCTTCAAGGACTATGCAAAAACAGATGGGCTGGAATACATTTGTCCCCACTGCAGCATAACAAATTTCCAGAAGAAGTCCCAGAAAACTGCAAACGGATATTAG 2223 0.4521 MMFHVQAASRNHCALLAVVCGKIPVSEDQQQHPYPFPELVSSGRLEVQILKNPSIHEFQRSLESLEPNFLYLQGEQLPGSEEIGSLTWGGVDLSSAEALVELFGPTLPTTVYLETPNGEKLAKALHSKGVSYVIYWKNAFSCYAACHFRQALFSVVQSSCSHTWDAFQLAHASFRLYCVQNNTVPSNNQKVSGKLGPCLLGDPPKINVVPPEVDEEESLPATLPVIKIYDADVSMRFLVCGAPSALDACLLGSLEDGLNALLCIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCLNDQLLESYIKNELIEKSQLVHAVPSCEESKLSSSEPRRSASIACGASVFEVRIKVPTWASQVLRQLAPDVSYRSLVTLGIASIQGLSVASFEKDDADRLLFFCTRHAKQLNQNNSILPRPPSWLIAPPASRKRSGPCHETKPSGYKVLGGVNGGVLQQKPKIAAMRPIPHTRNHKMLPFSGISEASRCDGDQAKGNLSVVPAKHNGTTPVTHRKLLSSSFQAQQIISLNPLPLKKHGCGRSPIQICSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFQKKSQKTANGY* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0018 740 CDD ARID 565 663 - -
Vvi11g0018 740 CDD PHD_ARID4_like 673 724 - -
Vvi11g0018 740 ProSiteProfiles ARID domain profile. 563 667 IPR001606 GO:0003677
Vvi11g0018 740 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 740 IPR042293 -
Vvi11g0018 740 Pfam ARID/BRIGHT DNA binding domain 566 663 IPR001606 GO:0003677
Vvi11g0018 740 SUPERFAMILY ARID-like 564 678 IPR036431 GO:0003677
Vvi11g0018 740 Gene3D - 561 666 IPR036431 GO:0003677
Vvi11g0018 740 SMART ARID_2 560 663 - -
Vvi11g0018 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 729 IPR013083 -
Vvi11g0018 740 SUPERFAMILY FYVE/PHD zinc finger 663 729 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0018 Vvi-Chr11 385797 394840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0018 2 739 ARID Transcription Factor Family AT3G43240 69.067 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi11g0018 ARID 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0018 - - vvi:100262830 1500.72