Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0014 ATGGGAAAAATAGTAGGGTGGACCCGTTTATGGCTTTTGGGGTTTGCACTTGCAGGTGCCTCCATGTCATGGGCTGCCATGGATGATGCCTATGAAAAGCGTGTCCAATCAGAGTGTGGCTTTACCACATATCCAAAGCTCTGTGTCCAGACCCTGTTGGGGTTGGGTCACTCCAAGGTTGATATTCCCTTTGTCCTTGTTAACAAGATTCTATCTGAGACCAGGCTGCCCACTTCGAACATTGCCAAATTCAGCTACCAGTTGGCAACCCCAGAAGCCCACTCTGCTCATCTTGTCAGAGATTCTTGTGACATGCTTATGAGCATGTCTCTGAAGCAGCTAAACCAATCACTGTTGGCTCTCAAAGAATCTGCAAGGAAAAACAAGCATGACATCCAGACATGGCTGAGTGCTGCCTTAACTTTTCAGCAGACTTGTAAAGACTTGGCCGTGGAGATGACTCGCTACTTTGGCACCTCAATGGTTCAGATTTCCAGCAAGATGGATCATCTATCTCAGTTGACCAACAATGCATTGGCTGTCATCAACAGAATTACCCCCGGGCCAAAGAAAACCACAAGTGGACGTGGTCTCTCTGAGGAACAAGTTTTCCCCAGCTGGGTATCACCCAGAGATCGGAAACTTCTCCAAACCACTACCATAAAAGCAAATGCCATAGTTGCACAAGATGGAACAGGCAACTATGAGACCATTTCTGATGCCATCCAGGCTGCCACTGGGAAACGTTTTGTGATCTATGTCAAGTCAGGAGTTTACAAGGAGAAAATTCACACCAACAAAGATGGCATCACCTTGATAGGAGACGGCAAATATTCCACTAGAATTGTTGGTGATGACAGCGTTGGTGGAGGAGCTTCCTTGCTTAGCACCGCTACGTTTACAATCACAGGTGATGGATTCATCGCAAAGGATATAGGATTTGAAAACGCTGCAGGCCCCAAAGGAGAACAGGCTGTGGCTTTGATGGTGTCTTCAGATCATTCTGTTCTCTACAAGTGCAGCATTGCAGGCTACCAAGATACTCTGTATGCTCAGGCACTCCGGCAATTCTACAGAGAATGCGACATTTATGGAACCATAGACTTCATTTTTGGAAATGCAGCTGCTGTTTTCCAGAACTGCTATTTGATTCTGCGTCGCCCACTTGGTGACTCTTTCAATGTGATTTTGGCTAATGGAAGGTCCAGTCCCGGACAGAACACTGGCTTCTCTATTCAAAAATGTACAATCATACCCAGCTCTGATTTCTCTGCAGTCAAACATTCCTACAAATCCTATCTGGGGAGACCCTGGAAAGAGTATTCAAGAGCAGTTGTGATGGAATCAAGCATAGATGATGCCATTGAAGGAAGAGGGTGGATTGAGTGGCCAGGATATGGGAGTTCAGTCCTTAAGTCTCTTTATTTTGCTGAATACTCCAACATAGGCCGTGGGGCTGCAACTTCCAGGAGAGTACAGTGGCCTGGGTTTCATCTTATTGGCACTGAAGAGGCCACTAAGTTCACTGTTGCAAACTTCATTGCTGGAACATCTTGGCTGCCCTCCACTGGAGTCATTTTCATCTCCGGCCTCCAGTAG 1599 0.4659 MGKIVGWTRLWLLGFALAGASMSWAAMDDAYEKRVQSECGFTTYPKLCVQTLLGLGHSKVDIPFVLVNKILSETRLPTSNIAKFSYQLATPEAHSAHLVRDSCDMLMSMSLKQLNQSLLALKESARKNKHDIQTWLSAALTFQQTCKDLAVEMTRYFGTSMVQISSKMDHLSQLTNNALAVINRITPGPKKTTSGRGLSEEQVFPSWVSPRDRKLLQTTTIKANAIVAQDGTGNYETISDAIQAATGKRFVIYVKSGVYKEKIHTNKDGITLIGDGKYSTRIVGDDSVGGGASLLSTATFTITGDGFIAKDIGFENAAGPKGEQAVALMVSSDHSVLYKCSIAGYQDTLYAQALRQFYRECDIYGTIDFIFGNAAAVFQNCYLILRRPLGDSFNVILANGRSSPGQNTGFSIQKCTIIPSSDFSAVKHSYKSYLGRPWKEYSRAVVMESSIDDAIEGRGWIEWPGYGSSVLKSLYFAEYSNIGRGAATSRRVQWPGFHLIGTEEATKFTVANFIAGTSWLPSTGVIFISGLQ* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0014 532 FunFam Pectinesterase 32 186 - -
Vvi11g0014 532 Gene3D - 218 531 IPR012334 -
Vvi11g0014 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 185 IPR035513 -
Vvi11g0014 532 PANTHER PECTINESTERASE 27 521 - -
Vvi11g0014 532 Pfam Plant invertase/pectin methylesterase inhibitor 35 180 IPR006501 GO:0004857
Vvi11g0014 532 Pfam Pectinesterase 224 516 IPR000070 GO:0030599|GO:0042545
Vvi11g0014 532 FunFam Pectinesterase 218 531 - -
Vvi11g0014 532 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Vvi11g0014 532 NCBIfam pectinesterase inhibitor domain 20 185 IPR006501 GO:0004857
Vvi11g0014 532 SMART PMEI_2 30 181 IPR006501 GO:0004857
Vvi11g0014 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 186 IPR035513 -
Vvi11g0014 532 SUPERFAMILY Pectin lyase-like 218 530 IPR011050 -
Vvi11g0014 532 CDD PMEI-like_3 39 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0014 Vvi-Chr11 336974 338968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0014 32 531 Carbohydrate Esterase AT2G45220 44.336 2.57e-133 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0014 K01051 - vvi:100245658 957.977