Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0013 ATGGCATTTCAGGATTTTGGCCATTTGTCAGAACGGCGGCGAATTGAAAGGCAACAAAGGTTCAAAAAGAGGATTTACATTGGTGCTGTTTCAGCGGTTGTGGTCATTCTTCTAGTTGCTGTTGGGGTGTTTGCTGCCGTCACTAGATCTGATGATCATGGCAATGATAATGGTAATGGTAATGGCCAAAAGACCGCAGCTGCAGTTAAACCTCAAAAGCAGGTGTCCCACAATGACAAGGCCATAAAAACCATATGTTCCGCTACAGATTACAAGCAGACATGCGAGAATAGCCTCTCAAAGCTGTCACGCTCCAACAGTACATTGTCTCAACCCAAAGATCTACTCAAGGTTGCAATTTCAGCTGCCTCCGATGGACTCCAAAAGGCCTTTGGTAAAACCGTGACGTTCAAGTTTGACACTCCAGAAGAGAAAGATGCTTATGAAGATTGTAAGGTACTGATGCAGAATGCCAAAGAAGAATTAGAGGCTTCAATATCCCAAGTTTCTGCTTCAAACAAGCTCTCCTCAGTCACCCAAGAGTTGAACAATTGGCTAAGTGCTGTCATGTCTTACCAAGCGACCTGCATTGATGGGTTCCCTGAAGGACCATTGAAAACCAATATGGAGAAAACTTTCAAGTCTGCAAAGGAACTCACCAGCAATGCCCTGGCCATTGTATCGAAGGTTACTTCAATCCTTTCATCATTCGACTTAACAGGTGCCAACCGTCACCTTCTAGCACAGGAATCCAGTGGGCCGTCTTTGGCCAACAACGGCCTTCCTATCTGGATGACCCGAGAGGATCGCAGGGTGTTGAAGCCTAAGGAATCCAATCTCACACCCAATGCGGTTGTGGCAAAGGATGGCAGTGGAAATTTCACTACCATTTCTGCTGCACTTGCAGCCATGCCACCCAAATACCCAGGACGGTATGTAATTTACGTTAAAGAAGGAGTTTATGACGAGACCGTGACAGTGGAAAGGAAGATGCAGAATGTCACCATGTATGGTGAAGGATCAAGGAAGACAATCGTCACAGGAAACAAAAATTTCGTAGATGGGGTTAGGACTTTCCAAACGGCAAGTTTCGTGGCTCTAGGAGATGGTTTCGTGGCTGTTTCCATGGGATTCAGAAACACAGCGGGGCCAGAAAAGCATCAGGCAGTGGCTATCAGAGTCCAATCGGATCGCTCAATTTTCCTCAACTGCCGTATGGACGGGTACCAAGACACGGTCTATGCACAAACCCATCGCCAGTTTTTCCGGGGCTGTGTCATCACTGGCACCATTGACTTCATATTCGGAGACGCTTCAGCCATCTTTCAGAACTGCTTGATCACCGTCAGGAAGCCCTTGGACAACCAACAAAACATCGTCACAGCCCAGGGAAGGACAGACAAACGTGAAACCACCGGAATTGTGCTGCAGAACTGCCGCATATTGCCAGACCAGGACTTGATCCCGACGAAGACCCAGGTCAAGAGTTACCTTGGGAGACCCTGGAAGGAGTTCTCCAGAACCATTGTGATGGAATCAACCATTGAGGATCTCATACAACCCCAGGGATGGTTACCTTGGGAAGGCAACTTTGCCCTCTCCACCCTCTACTACGCTGAATACAACAACAAAGGACCTGGTGCTGCACTCAGCGCCAGGGTGAAGTGGCCTGGTTACAAGGTCATTGAAAAAGAGGAGGCCGTGAAATACACAGTGGGGCCTTTCATACAAGGGGATGATTGGTTGAAGGCCGACTATGGCATTAGCCTTCCTGTTCATTTCGGCTTATATTAA 1794 0.4771 MAFQDFGHLSERRRIERQQRFKKRIYIGAVSAVVVILLVAVGVFAAVTRSDDHGNDNGNGNGQKTAAAVKPQKQVSHNDKAIKTICSATDYKQTCENSLSKLSRSNSTLSQPKDLLKVAISAASDGLQKAFGKTVTFKFDTPEEKDAYEDCKVLMQNAKEELEASISQVSASNKLSSVTQELNNWLSAVMSYQATCIDGFPEGPLKTNMEKTFKSAKELTSNALAIVSKVTSILSSFDLTGANRHLLAQESSGPSLANNGLPIWMTREDRRVLKPKESNLTPNAVVAKDGSGNFTTISAALAAMPPKYPGRYVIYVKEGVYDETVTVERKMQNVTMYGEGSRKTIVTGNKNFVDGVRTFQTASFVALGDGFVAVSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRMDGYQDTVYAQTHRQFFRGCVITGTIDFIFGDASAIFQNCLITVRKPLDNQQNIVTAQGRTDKRETTGIVLQNCRILPDQDLIPTKTQVKSYLGRPWKEFSRTIVMESTIEDLIQPQGWLPWEGNFALSTLYYAEYNNKGPGAALSARVKWPGYKVIEKEEAVKYTVGPFIQGDDWLKADYGISLPVHFGLY* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0013 597 PANTHER PECTINESTERASE 36 583 - -
Vvi11g0013 597 FunFam Pectinesterase 78 231 - -
Vvi11g0013 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 231 IPR035513 -
Vvi11g0013 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 231 IPR035513 -
Vvi11g0013 597 CDD PMEI-like_3 84 232 - -
Vvi11g0013 597 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Vvi11g0013 597 Pfam Plant invertase/pectin methylesterase inhibitor 81 226 IPR006501 GO:0004857
Vvi11g0013 597 MobiDBLite consensus disorder prediction 50 73 - -
Vvi11g0013 597 FunFam Pectinesterase 277 591 - -
Vvi11g0013 597 SMART PMEI_2 77 226 IPR006501 GO:0004857
Vvi11g0013 597 MobiDBLite consensus disorder prediction 52 73 - -
Vvi11g0013 597 Pfam Pectinesterase 283 579 IPR000070 GO:0030599|GO:0042545
Vvi11g0013 597 Gene3D - 277 588 IPR012334 -
Vvi11g0013 597 NCBIfam pectinesterase inhibitor domain 75 230 IPR006501 GO:0004857
Vvi11g0013 597 SUPERFAMILY Pectin lyase-like 282 586 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0013 Vvi-Chr11 319173 321226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0013 1 597 Carbohydrate Esterase AT2G26450 51.033 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0013 - - vvi:100257766 1172.53