Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0012 ATGCCAGCAGATATACTCTCCAAAAAAAAAAAAAAAAAAAAAAAAATCTTGAATGGCTTCTTCACCCTTCATGCTTTGCCTCATCATCCAAATTACCAAATTCCATGCAACTCTCACGTTCCCAATTCCACACTATATATTACTTTAATCTCCCCGACATGTATCATATCAATCCCTGACATTGCCCTCTTGGAAGGTCCAACTCTCATGACTTCCTCATCACTGAGATGGCTACTGTTCCTTTGCCCAATCTTCTTCTTCTCAGGGGCCTCTGCTCTCAACTACTCCAATGCTTCATATACTTCTCTAAAGTCTGTGACATCTTTCTGCAAATCTACACCTTACCCAGATGTTTGTTTTCAATCTTTGAAGGTCCACGTCTCTATCAATATCAATCCCAACATCATCACCTTTCTCCTTCACTCCCTCCAGACTGCAATATCAGAAGCTGGGAAGGTCTCCACCCTGCTGTCCACTGCCGGACAGCACTCTGATGTCATTGAAAAGCAAAGAGGAACCATCCAGGATTGCAGGGAACTCCACCAAATCACCGTGTCTTCTTTGCAGAGATCCGTGTCCCGAGTCCGTTCAGGGGACTCCCAGAAACTGAAAGATGCGAGAGCCTTTCTCAGCGCATCCCTCACAAACAAGGTTACATGCTTAGAAGGCCTGGATTCTGCCGCTGGTCCTTCCAAGCCAACGTTGGTGAATTCCATAGTTGCTGCTTACAAGCATGTGAGTAATTGTCTCTCGGTTCTGTCTAAGTCAACCCCACAAAAAGGCCCCATCAATCGCCGCCTTATGGGTGCCCCAGCATGGGCGTCCCGCCGGATATTGCAGAGCTCCGGTGACGAGTATGACCCCAGTGAGGTGCTTACTGTGGCTGCGGATGGAACTGGGAACTTCACCACCGTCACTGATGCAATAAATTTTGCTCCCAATAACAGCAATGACAGAATAATTATCTATGTCAGGGAAGGGGTTTATGAGGAAAATGTTGATATTCCAAGCCATAAGACCAATATTGTTTTTCTGGGAGATGGAAGTGATGTTACCTTCATTACTGGAAGCAGAAGTGTGGTGGATGGCTGGACTACTTTCAGATCTGCAACTGTTGCCGTCTCTGGGGAGGGATTTCTGGCACGCGACATAACCTTCGAGAACAGGGCAGGACCAGAGAAGCACCAAGCAGTTGCCCTTCGCATAAATGCCGACTTAGCAGCAGTGTACAAATGCACCATTCTAGGTTACCAGGACACATTGTATGTGCATTCGTTTAGACAATTTTACAGAGAGTGTGACATATTTGGGACAATAGATTTCATATTTGGAAATGCAGCTGTTGTTTTCCAGGCTTGCAACATTGTAGCCAGAATGCCAATGGCTGGCCAATTCACTGTTGTAACAGCACAATCCAGGGACACCTCAGATGAGGACACTGGAATCTCAATACAGAACTGTTCCATTTCGGCTACTGATGACTTGTATTCGAATCGTGGCAGTGTCAAAAGCTACCTGGGGAGGCCATGGAAGGTGTACGCTCGCACAGTTTATCTTGAGTCCTACATTGATGACTTCATTGATCCATCTGGGTGGACCGAATGGAATGGAAATGAAGGCTTGGACACTTTATATTATGGAGAGTATGACAATAATGGACCTGGGTCAGGGACAGAGAATCGAGTTACTTGGCAAGGGTATCATGTGATGGAAGATAACGATGCCTATAATTTCACAGTATCTGAGTTTATTACAGGTGATGAATGGCTGGACTCAACATACTTCCCTTACGATGATGGGATTTAA 1806 0.4551 MPADILSKKKKKKKKILNGFFTLHALPHHPNYQIPCNSHVPNSTLYITLISPTCIISIPDIALLEGPTLMTSSSLRWLLFLCPIFFFSGASALNYSNASYTSLKSVTSFCKSTPYPDVCFQSLKVHVSININPNIITFLLHSLQTAISEAGKVSTLLSTAGQHSDVIEKQRGTIQDCRELHQITVSSLQRSVSRVRSGDSQKLKDARAFLSASLTNKVTCLEGLDSAAGPSKPTLVNSIVAAYKHVSNCLSVLSKSTPQKGPINRRLMGAPAWASRRILQSSGDEYDPSEVLTVAADGTGNFTTVTDAINFAPNNSNDRIIIYVREGVYEENVDIPSHKTNIVFLGDGSDVTFITGSRSVVDGWTTFRSATVAVSGEGFLARDITFENRAGPEKHQAVALRINADLAAVYKCTILGYQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVFQACNIVARMPMAGQFTVVTAQSRDTSDEDTGISIQNCSISATDDLYSNRGSVKSYLGRPWKVYARTVYLESYIDDFIDPSGWTEWNGNEGLDTLYYGEYDNNGPGSGTENRVTWQGYHVMEDNDAYNFTVSEFITGDEWLDSTYFPYDDGI* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0012 601 Pfam Plant invertase/pectin methylesterase inhibitor 105 251 IPR006501 GO:0004857
Vvi11g0012 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 105 254 IPR035513 -
Vvi11g0012 601 FunFam Pectinesterase 286 601 - -
Vvi11g0012 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 101 255 IPR035513 -
Vvi11g0012 601 Pfam Pectinesterase 293 587 IPR000070 GO:0030599|GO:0042545
Vvi11g0012 601 NCBIfam pectinesterase inhibitor domain 81 254 IPR006501 GO:0004857
Vvi11g0012 601 PANTHER PECTINESTERASE 85 591 - -
Vvi11g0012 601 Gene3D - 287 601 IPR012334 -
Vvi11g0012 601 CDD PMEI-like_3 108 255 - -
Vvi11g0012 601 SMART PMEI_2 101 252 IPR006501 GO:0004857
Vvi11g0012 601 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Vvi11g0012 601 FunFam Pectinesterase 102 255 - -
Vvi11g0012 601 SUPERFAMILY Pectin lyase-like 289 599 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0012 Vvi-Chr11 315764 317760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0012 105 601 Carbohydrate Esterase AT2G26440 67.383 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0012 - - vvi:104880620 1072