Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0011 ATGGTGAAGATTGGGGAAACATTTGGGGAGTCCGGCAAGAAGAAGAGTAGGAGGGTCTTGTTAGGAGTTAGTGCTTCTCTTGTATTCCTTCTAGTACTGGTGGTGACTGTGGCGAGAGTCTCTGTGTCTCCACACAATTCCCAACATCAAAACTGGGCAGCTCACCCCATCGTCAAATCCTCCTGCAGTGCCACTTTGTACCCAGAGCTATGCTTCTCCGCAGTGTCATCGAGGGAAGGGGAGGAAGCCAAAATCACGAAGCCAAAGGATGTGATTGAGGCGGTGTTGAACTTCACCATAACAACAGTCCAGCACAACTACTTCACGTTGCAGCACATCATCAAAACCCGCTTAGGCCTTTCCCCGCGGGAGAAGGCTGCCCTCCACGATTGTCTGGAAATGGTGGACGACACCCTCGACGAGCTTCACAAGTCTGCTCTTGATCTCCAGGACTATTCTCTCAACAAGTCCATATCCCAACAAGCCGACGACCTCATCACACTGTTGAGTGCCGCCATGACCAACCAAGAAACATGCATTGATGGATTCTCCCACGATGGGGCCGACAAGAAGATTCGGAAAGGGTTGATGGATGGCCAAATGCAGGCCTTCCGGTTGTGCAGCAACGTGCTGGCCATGATCAAGAACCTCACCGACACTGACATGGCCGCCGCAGCCTCTGCTGCTGGGCGGCAGCTTCGGGAGGAGGAGGAGGAAGCGACTGCAACAGCAATAGAGTGGCCCGAGTGGTTGTCCGCCGGAGATCGGAGACTGTTGCAAGCGTCCACTGTGACGGCGGATGTGACGGTGGCTGCGGATGGCAGTGGAAACTATAAGACAGTGGGGGAGGCGGTGGCGTCGGCGCCGGAGAGGAGTAGTAAAAGGTACATAATAAGGATAAAAGCAGGAGTATACAAGGAAAACGTGGAGGTGCCGAAGAAGAAGACAAACATAATGTTCGTGGGAGATGGGAGGACCAATACCATCATCACCGCCAGTCGGAATGTGGTTGATGGCAGCACAACCTTCCACTCTGCCACTGTTGCGGTGGTGGGAGACGGGTTCCTAGCGAGGGACATAACTTTCCAGAACACAGCAGGGCCATCAAAGCACCAAGCAGTGGCACTTCGTGTGGGATCAGATCTATCGGCATTCTACAGGTGTGACGTGCTTGCATATCAGGACACCCTCTATGTTCACTCCCTCCGCCAGTTCTTCGTCGGCTGTCTCGTTGCTGGCACTGTTGACTTCATCTTCGGAAATGCTGCTGCTGTCTTGCAGGACTGTGACATCCACGCCCGTCGCCCAAACTCAGGTCAGAGGAACATGGTCACCGCTCAAGGCCGAGATGACCCTAACCAAAACACTGGCATTGTCATCCAGAAGTGCAGGATCGGTGCAACCTCGGATCTAAAGCCCGTCCAGAGCAGCTTCCCTACTTATCTGGGGAGGCCATGGAAGGAGTACTCCAGGACCGTTGTCATGCAGACAAGTATCAGTGATGTGATCAACCCAGCTGGGTGGTACCCTTGGAATGGCAATTTTGCTCTGGACACCCTCTTCTATGCCGAGTATCAGAACACAGGGGCAGGTGCAGACACCTCCAAGAGGGTGAACTGGAAGGGCTTCAAGGTGATCACCAGTGCAAGTGAGGCCCAGGCTTTTACTGCCGGCAGTTTTATTGGGGGAAGTAGTTGGTTGCCTTCCACCGGCTTTCCCTTCTCTCTGGGTCTCTAA 1737 0.5377 MVKIGETFGESGKKKSRRVLLGVSASLVFLLVLVVTVARVSVSPHNSQHQNWAAHPIVKSSCSATLYPELCFSAVSSREGEEAKITKPKDVIEAVLNFTITTVQHNYFTLQHIIKTRLGLSPREKAALHDCLEMVDDTLDELHKSALDLQDYSLNKSISQQADDLITLLSAAMTNQETCIDGFSHDGADKKIRKGLMDGQMQAFRLCSNVLAMIKNLTDTDMAAAASAAGRQLREEEEEATATAIEWPEWLSAGDRRLLQASTVTADVTVAADGSGNYKTVGEAVASAPERSSKRYIIRIKAGVYKENVEVPKKKTNIMFVGDGRTNTIITASRNVVDGSTTFHSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDVLAYQDTLYVHSLRQFFVGCLVAGTVDFIFGNAAAVLQDCDIHARRPNSGQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLKPVQSSFPTYLGRPWKEYSRTVVMQTSISDVINPAGWYPWNGNFALDTLFYAEYQNTGAGADTSKRVNWKGFKVITSASEAQAFTAGSFIGGSSWLPSTGFPFSLGL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0011 578 ProSitePatterns Pectinesterase signature 1. 292 311 IPR018040 -
Vvi11g0011 578 FunFam Pectinesterase 54 218 - -
Vvi11g0011 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 219 IPR035513 -
Vvi11g0011 578 NCBIfam pectinesterase inhibitor domain 28 218 IPR006501 GO:0004857
Vvi11g0011 578 CDD PMEI-like_3 60 218 - -
Vvi11g0011 578 Gene3D - 261 578 IPR012334 -
Vvi11g0011 578 FunFam Pectinesterase 261 578 - -
Vvi11g0011 578 Pfam Pectinesterase 267 563 IPR000070 GO:0030599|GO:0042545
Vvi11g0011 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 218 IPR035513 -
Vvi11g0011 578 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Vvi11g0011 578 PANTHER PECTINESTERASE 30 568 - -
Vvi11g0011 578 SMART PMEI_2 53 213 IPR006501 GO:0004857
Vvi11g0011 578 Pfam Plant invertase/pectin methylesterase inhibitor 57 213 IPR006501 GO:0004857
Vvi11g0011 578 SUPERFAMILY Pectin lyase-like 262 577 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0011 Vvi-Chr11 308059 311798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0011 53 578 Carbohydrate Esterase AT3G14310 70.240 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0011 K01051 - vvi:104880619 1082.78