Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0008 ATGGCGTCTCAACGAGAAGACAAGATCAAGGACGAGAAAACCCCTCCTCTCGATGAAGACGACATTGCCCTCCTTAAAACCTATGGCCAAGGACCATACTCTGACAGAATAAAAATAGTGGAGAAAGAAATCGAGGAAATGGTGAAGAAGATGGATGATATTTGTGGTATCGCGGAATCTGACACTGGTTTGGCTCCACCAAGTCACTGGAATCTTCCTTCTGATAGACTAATGATGCAGAATGAGAAGTCACTTCGGGTTGCAAGGTGCACGAGGATAATCAACCCCAATTCTGAAAACCCCCAGTATATGATAGATGTCAAGCCAACTGCAACGTACGTGGTCAAACTGGGTGCCAACGTCTCCCAAACGGATATAGATGAAGGCATGCGTGTTGGGATTGATCGAATTACACGTCAGATTGAGATGCCATTGCCCCCAAAGATTAATCCAAGTGTAACAATGTTGATAGTAGAAGAGAAGCCTAATGTAACATATGATGATGTTGGTGGATGTAAAGAGCAGATTGAGAAGCTGCGCGAGGTTGTTGAGCTGCCCATGCTTCACCCGGAGAAATTTGAGAAACTTGGAATCGAACCTCCCAAGGGTGTGCTGTTTTATGGTCCTCCTGGAACTGGCAAGACTCTCTTAGCTAGAGCTGTGGCCAATAGAACTGGTGCATGTTTTATTCGTGTTATTGGGAGTGAACTTGTTCGAAGATATGTTGGTGAGGGTGCCCGCATGGTCCGACAGATTTTTCGGATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTCAACGTACCATGCTTGAAATTGTAAATCAGCTTGATGGTTTTGATGCTCGAGGAAACATCAAAGTTATGATGGCAACAAACAGACCTGGTACACTGGACCCAGCTCTATTACGTCCTGGGAGACTAGATCGGAAGCTTGAATTTGGGCTACCCGATGTGAAGAGCGGGACACAAATATTCAAGATCCACACTCGAACTATGAACTGTGAAAGAGATATTCGTTTTGAGCTTCTTGCACGCATTTGCCCCAGCTCTACTGGAGCTGACATAAGGAGTGTCTGCACTGAGGCTGGGATGTTTGCTATTAGAGCACGTAGGAAGATTGTGACAGAGCGAGATTTCCTTGATTCAATAAAAAAGGTCATCAAGGGCCACCTCAAGTTCAGTGCAACACCGGAGTACATGATTTACAACTGA 1278 0.4538 MASQREDKIKDEKTPPLDEDDIALLKTYGQGPYSDRIKIVEKEIEEMVKKMDDICGIAESDTGLAPPSHWNLPSDRLMMQNEKSLRVARCTRIINPNSENPQYMIDVKPTATYVVKLGANVSQTDIDEGMRVGIDRITRQIEMPLPPKINPSVTMLIVEEKPNVTYDDVGGCKEQIEKLREVVELPMLHPEKFEKLGIEPPKGVLFYGPPGTGKTLLARAVANRTGACFIRVIGSELVRRYVGEGARMVRQIFRMARSKRACIVFFDEVDAIGGARFDDGKGGDREVQRTMLEIVNQLDGFDARGNIKVMMATNRPGTLDPALLRPGRLDRKLEFGLPDVKSGTQIFKIHTRTMNCERDIRFELLARICPSSTGADIRSVCTEAGMFAIRARRKIVTERDFLDSIKKVIKGHLKFSATPEYMIYN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0008 425 FunFam Proteasome regulatory ATPase subunit 1 33 156 - -
Vvi11g0008 425 Pfam ATPase family associated with various cellular activities (AAA) 204 336 IPR003959 GO:0005524|GO:0016887
Vvi11g0008 425 Gene3D - 31 156 IPR012340 -
Vvi11g0008 425 FunFam 26S protease regulatory subunit 7 157 336 - -
Vvi11g0008 425 Gene3D - 344 419 - -
Vvi11g0008 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 416 IPR027417 -
Vvi11g0008 425 Pfam AAA+ lid domain 359 402 IPR041569 -
Vvi11g0008 425 FunFam 26S protease regulatory subunit 7 338 409 - -
Vvi11g0008 425 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 410 - -
Vvi11g0008 425 SMART AAA_5 200 339 IPR003593 GO:0016887
Vvi11g0008 425 CDD RecA-like_PAN_like 165 335 - -
Vvi11g0008 425 ProSitePatterns AAA-protein family signature. 307 325 IPR003960 GO:0005524|GO:0016887
Vvi11g0008 425 Gene3D - 157 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0008 Vvi-Chr11 266568 271652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0008 169 390 Calmodulin-binding Proteins AT3G56690 37.220 4.25e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0008 K03061 - vvi:100245720 831.632