Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0003 ATGGAGAATCCGGGTAATCTGATACACAAGGCGGCTGCCATCGTTTTTGCAGTCATGAGGTGGGTCTTGTCCTGGACTCTCAGACCATCTACCAATTCCTTTTCTTCTTCTCCTTCCGATTCCATGGTCCAGCAAACTCCTTCTGGAGATCTCAGGCAAAGGCTATCTAAAAGTTGCGATACATGTGCTGTGTGCTTGAACCAACTAAGGAAGCGAGACCAGGTGAGGGAGCTTGGGAACTGTTGCCATGTGTTTCATAGGCTATGCATCGACACATGGATTGATCATGGGTATAATAAGACGTGCCCACTCTGCAGGGCTCCTCTACTCACCTCCACCAGGCTGGGTTCCCAACCCAGTTGGGCCGTGGAGCGACTTCTATATCTCTTTGGGGACGATCTGCTTATCTGA 411 0.5012 MENPGNLIHKAAAIVFAVMRWVLSWTLRPSTNSFSSSPSDSMVQQTPSGDLRQRLSKSCDTCAVCLNQLRKRDQVRELGNCCHVFHRLCIDTWIDHGYNKTCPLCRAPLLTSTRLGSQPSWAVERLLYLFGDDLLI* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0003 136 ProSiteProfiles Zinc finger RING-type profile. 62 106 IPR001841 -
Vvi11g0003 136 PANTHER RING ZINC FINGER PROTEIN-RELATED 17 134 - -
Vvi11g0003 136 Pfam Ring finger domain 60 106 IPR001841 -
Vvi11g0003 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 111 IPR013083 -
Vvi11g0003 136 SMART ring_2 62 105 IPR001841 -
Vvi11g0003 136 SUPERFAMILY RING/U-box 61 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0003 Vvi-Chr11 37864 38274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0003 7 136 C3H Transcription Factor Family AT5G20885 41.104 2.91e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0003 K16281 - vvi:104880669 276.944