Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g1008 | ATGGCGGGGACTGACAGGCGGCAAATCGAAAACAAAAGCATTTCTGAATTTCCCTCCAATGTTGTCTTATTAAAAATCAAAGCAATCTCCCTGTCTCTCCATCTCCTTTCTCGATCTCTTTTCCACCCTCTCTCTAGAGCTCTGAAGATGGCTGGACCTAAGCAGAGGAAAAGGGTTGAAGCTGAGACCAGTTCTCTCAAACGCGCCAGAGACGGTAGTGCTTTTATCAGATGTGAAGAATGCAAGAAGGATGTCCCAGTGGTGCTTATAGACATGCACAGTTGCAGTCTTGAGGCTAAAATCAAGTTAAATTTAGAGGCCCAGGTTGTGGAGAAGGTCACAGATGTGAAAAAGAAGCCAGCAGAAAAAAAGAATGCCACAACAACAGAACCAAAGCCAAAGAAGTCCAGGAGATTGAGGAAGGTGAAGGATCCAAACATGCCCAAGAGGCCTCCCACAGCTTTCTTTCTCTTCATGGATGATTTCAGAAAGGAATATAAGGAATCAAATCCAGACTCTAAGAATGTTTCTGTGGTTGCAAAGGAAGGTGGTGAAAAATGGAAGTCTATGACTGATGAAGAGAAGAAGCCTTACGTGGATAAAGCTGCTGAGCTGAAGGCTGAGTATGACAAGGCAATGGAGACTTACAATGCTGAGAATGGAGAGGAAGAGGGAGGCTCAGGCAAGGAAGCTGATCTGGAATTAATAGATGATGAGTAG | 720 | 0.4444 | MAGTDRRQIENKSISEFPSNVVLLKIKAISLSLHLLSRSLFHPLSRALKMAGPKQRKRVEAETSSLKRARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLEAQVVEKVTDVKKKPAEKKNATTTEPKPKKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEYDKAMETYNAENGEEEGGSGKEADLELIDDE* | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g1008 | 239 | SMART | hmgende2 | 147 | 218 | IPR009071 | - | |
Vvi10g1008 | 239 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 12-RELATED | 54 | 232 | - | - | |
Vvi10g1008 | 239 | MobiDBLite | consensus disorder prediction | 215 | 239 | - | - | |
Vvi10g1008 | 239 | Coils | Coil | 199 | 222 | - | - | |
Vvi10g1008 | 239 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 148 | 217 | IPR009071 | - | |
Vvi10g1008 | 239 | Pfam | HMG (high mobility group) box | 148 | 217 | IPR009071 | - | |
Vvi10g1008 | 239 | MobiDBLite | consensus disorder prediction | 215 | 232 | - | - | |
Vvi10g1008 | 239 | MobiDBLite | consensus disorder prediction | 115 | 150 | - | - | |
Vvi10g1008 | 239 | SUPERFAMILY | HMG-box | 140 | 222 | IPR036910 | - | |
Vvi10g1008 | 239 | Gene3D | High mobility group box domain | 131 | 228 | IPR036910 | - | |
Vvi10g1008 | 239 | FunFam | high mobility group B protein 7 isoform X1 | 143 | 223 | - | - | |
Vvi10g1008 | 239 | CDD | HMG-box_AtHMGB1-like | 149 | 209 | - | - | |
Vvi10g1008 | 239 | MobiDBLite | consensus disorder prediction | 115 | 133 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi10g1008 | Vvi-Chr10 | 17403589 | 17405769 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Vvi10g1008 | HMG_box | 3.3e-22 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g1008 | K25507 | - | vvi:100247584 | 444.121 |