Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g1008 ATGGCGGGGACTGACAGGCGGCAAATCGAAAACAAAAGCATTTCTGAATTTCCCTCCAATGTTGTCTTATTAAAAATCAAAGCAATCTCCCTGTCTCTCCATCTCCTTTCTCGATCTCTTTTCCACCCTCTCTCTAGAGCTCTGAAGATGGCTGGACCTAAGCAGAGGAAAAGGGTTGAAGCTGAGACCAGTTCTCTCAAACGCGCCAGAGACGGTAGTGCTTTTATCAGATGTGAAGAATGCAAGAAGGATGTCCCAGTGGTGCTTATAGACATGCACAGTTGCAGTCTTGAGGCTAAAATCAAGTTAAATTTAGAGGCCCAGGTTGTGGAGAAGGTCACAGATGTGAAAAAGAAGCCAGCAGAAAAAAAGAATGCCACAACAACAGAACCAAAGCCAAAGAAGTCCAGGAGATTGAGGAAGGTGAAGGATCCAAACATGCCCAAGAGGCCTCCCACAGCTTTCTTTCTCTTCATGGATGATTTCAGAAAGGAATATAAGGAATCAAATCCAGACTCTAAGAATGTTTCTGTGGTTGCAAAGGAAGGTGGTGAAAAATGGAAGTCTATGACTGATGAAGAGAAGAAGCCTTACGTGGATAAAGCTGCTGAGCTGAAGGCTGAGTATGACAAGGCAATGGAGACTTACAATGCTGAGAATGGAGAGGAAGAGGGAGGCTCAGGCAAGGAAGCTGATCTGGAATTAATAGATGATGAGTAG 720 0.4444 MAGTDRRQIENKSISEFPSNVVLLKIKAISLSLHLLSRSLFHPLSRALKMAGPKQRKRVEAETSSLKRARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLEAQVVEKVTDVKKKPAEKKNATTTEPKPKKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEYDKAMETYNAENGEEEGGSGKEADLELIDDE* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g1008 239 SMART hmgende2 147 218 IPR009071 -
Vvi10g1008 239 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 54 232 - -
Vvi10g1008 239 MobiDBLite consensus disorder prediction 215 239 - -
Vvi10g1008 239 Coils Coil 199 222 - -
Vvi10g1008 239 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 148 217 IPR009071 -
Vvi10g1008 239 Pfam HMG (high mobility group) box 148 217 IPR009071 -
Vvi10g1008 239 MobiDBLite consensus disorder prediction 215 232 - -
Vvi10g1008 239 MobiDBLite consensus disorder prediction 115 150 - -
Vvi10g1008 239 SUPERFAMILY HMG-box 140 222 IPR036910 -
Vvi10g1008 239 Gene3D High mobility group box domain 131 228 IPR036910 -
Vvi10g1008 239 FunFam high mobility group B protein 7 isoform X1 143 223 - -
Vvi10g1008 239 CDD HMG-box_AtHMGB1-like 149 209 - -
Vvi10g1008 239 MobiDBLite consensus disorder prediction 115 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g1008 Vvi-Chr10 17403589 17405769 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi10g1008 HMG_box 3.3e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g1008 K25507 - vvi:100247584 444.121