Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g1001 ATGGCTGCAATGGATCCTATAGATATTACTTCATCATCTGATAGTGACTTTGACTTTGAAGATGATAGAGAAACAGATACATCACCTGTGGGGGAATCTGTTGCTTTTGCAAATTCCAGGATTCTTCCACCATGGCCCTCCACATCTGGTCATGGACATTTTCAGAAGGTCCCTTCTCCTAAACGAGCATCTGCTTCTAATGGAAGCTCTTCAAATTTTTATCATTATCCACCTAAAATCCAAATGCATCCTAGTTTTGATGATGACATCAGAGCTTCAAATCGGCATAATTTTCGGGAAGCTGATTTTAACTATTCTACGGAGAATGGGGACATGTTGGATGTAGAAAATCATCAACAGCTTATTAATTTGAACAAAGCTGATATATTTGGTGCAGATTATGAAAAATTATCTCAACCAGCTATGAGGAGGACCCTTCCATCTACTCTTCAGCCATCTGCACCAAGTGCTGGGATGAACAATACAGTAGGGAATATTGGTAGCAGTCATATTCATGATTCTCAAGGAAAATCTTTTCATCCTGTGGGACCTATACTAAACAACATGAACTATATGAAAGAACACTTTGGCAGGGGCAATGATGATGAAGTTATTATGTATGAAAATAGTGGAAGTAGGATCCTACCTCCATCTTTGATGCATGGAAAGTCTGTTCCCTCTACACAGTATGGTGGTGTAAGTGAATCTGCATATCGACCGGGGGTAGCTGAAGAAATGGCTGCTAATACTGATGAAAGACTAGTTTATCAAGCAGCATTACAGGATCTGAATCAACCAAAAGTTGAAGCAACTTTACCAGATGGTCTTTTGACAGTCTCTCTTTTAAGACACCAGAAAATTGCATTGGCATGGATGCATCAGAAGGAAACAAGAAGTTTACATTGTTTGGGCGGGATTCTAGCTGATGATCAGGGCCTTGGTAAGACGGTCTCAATGATTGCCCTTATTCAAATGCAGAAATCTTTGCAGTCAAAATCTAAATCGGAAGAGCTACATAATCACAGTACTGAAGCATTAAATCTGGATGATGATGATGACAATGCCAATGCTGCTGGTTCAGATAAAGGCAAGCAGACTGAAGAGACTAGTGATTCTAAGCCAATTTCAGAAGTGAGTGCTTCTCTGCCGGAATTCCGTAGGCGGAGGCCAGCTGCTGGTACATTGGTTGTGTGTCCAGCAAGTGTTCTTCGGCAATGGGCAAGGGAATTGGATGAAAAAGTTTCTGAGGAAGCCAAGCTTTCTGTTTGTCTCTATCATGGAGGCAGTAGAACAAAGGATCCTGTTGAACTGGCTAAGTATGATGTTGTGCTCACTACATATTCTATTGTGACTAATGAAGTTCCCAAACAGCCTTTAGTTGATGATGATGAAGGTGATGAAAGAAATGGGGAAAAGTATGGATTATCTTCCGAATTTTCTGTCAATAAAAAGAGGAAAAAGCCTTCCAATGTTAGTAAGAGGGGAAAGAAAGGTAGAAAAGGGATTGATAGTTCCTCCATTGATTATGATTGTGGTCCCCTTGCAAGAGTGGGTTGGTTCAGGGTGATATTAGATGAAGCTCAAACCATAAAAAATCACAGAACACAAGTGGCTAGAGCCTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATACAAAATGCTATTGATGACTTGTACAGCTACTTCAGATTTCTGAAATATGATCCTTATGCTGTCTATAAATCATTTTACAATACAATAAAGGTTCCAATATCCAGAAATTCAGTCCATGGTTACAAGAAGCTTCAAGCAGTTCTGAGGGCTATAATGCTGCGTCGTACAAAAGGCACATTGATTGATGGAACGCCTATTATTAACCTGCCACCAAAAACAATATGCTTGTCTAAGGTGGACTTCTCCAGTGAGGAGCGGGCTTTCTATTCCAAGCTAGAAGCTGATTCACGTTCACAATTCAAGGAATATGCAGCTGCTGGCACTGTTAATCAAAATTATGCAAATATTCTCCTTATGCTTTTGCGACTTCGTCAGGCTTGTGACCACCCACTTCTTGTAAAAGGATACAATACCGATTCTATTAGAAAAGTTTCTTCTGAGATGGCAAAGAAGCTTCCTAGTGACATTTTGATTAATTTATTGGATATTTTGGAAACTTCTGCCATCTGTCGTGTATGCAATGATCCACCTGAGGATGCTGTTGTTACCATGTGTGGCCATGTTTTCTGCTATCAGTGTGTATCAGAATATTTGACTGGTGATGACAATACATGCCCCGCACTCGAATGCAAAGAACAACTTGGTGCTGATGTTGTGTTTTCCAAAGCTACTCTAATAAGTTGTATTTCTGATGAACTTGATGGCAGTCTCTCAAATTCTTCTCAGTCTGCAGAGAAATCGATAAATCTGCAGAATGAGTACAGTTCGTCTAAAATCAGAGCTGCTCTTGAGATTCTGCAGTCACATTGTAAGTTAACGAGTCCAGATTCGGATCCACACAGTTCCATGGGATGCAATGGATGTTCTTCTTCAGCAAAGATATACACTGAACAGTGCTATTCAGGTGTTGGTTCTTCCAAGCAAACAACAGCATATTCAAACCCAGAAACTGAAGGACCAATAAAAGCTATTGTTTTCTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGATGTCAATGAACCATTCATGCATACAATATCGGAGGCTTGATGGGACAATGTCTTTGGCTTCAAGAGACAGGGCTGTCAAAGATTTCAACACTGATCCCGAGGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAGGCTGTTGACCGAGCCCATAGAATTGGACAAACACGTCCGGTTACTGTATCACGGATCACTATTAAGGATACTGTAGAAGATAGGATATTAGCTCTTCAGGAAGACAAGAGGAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAACTGGAGGATCTGCAACTCGCCTCACCGTTGAAGATCTTAAATATCTATTCATGGTCTAA 3099 0.4069 MAAMDPIDITSSSDSDFDFEDDRETDTSPVGESVAFANSRILPPWPSTSGHGHFQKVPSPKRASASNGSSSNFYHYPPKIQMHPSFDDDIRASNRHNFREADFNYSTENGDMLDVENHQQLINLNKADIFGADYEKLSQPAMRRTLPSTLQPSAPSAGMNNTVGNIGSSHIHDSQGKSFHPVGPILNNMNYMKEHFGRGNDDEVIMYENSGSRILPPSLMHGKSVPSTQYGGVSESAYRPGVAEEMAANTDERLVYQAALQDLNQPKVEATLPDGLLTVSLLRHQKIALAWMHQKETRSLHCLGGILADDQGLGKTVSMIALIQMQKSLQSKSKSEELHNHSTEALNLDDDDDNANAAGSDKGKQTEETSDSKPISEVSASLPEFRRRRPAAGTLVVCPASVLRQWARELDEKVSEEAKLSVCLYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVDDDEGDERNGEKYGLSSEFSVNKKRKKPSNVSKRGKKGRKGIDSSSIDYDCGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGTPIINLPPKTICLSKVDFSSEERAFYSKLEADSRSQFKEYAAAGTVNQNYANILLMLLRLRQACDHPLLVKGYNTDSIRKVSSEMAKKLPSDILINLLDILETSAICRVCNDPPEDAVVTMCGHVFCYQCVSEYLTGDDNTCPALECKEQLGADVVFSKATLISCISDELDGSLSNSSQSAEKSINLQNEYSSSKIRAALEILQSHCKLTSPDSDPHSSMGCNGCSSSAKIYTEQCYSGVGSSKQTTAYSNPETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQYRRLDGTMSLASRDRAVKDFNTDPEVTVMLMSLKAGNLGLNMVAASLVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRITIKDTVEDRILALQEDKRKMVASAFGEDQTGGSATRLTVEDLKYLFMV* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g1001 1032 SUPERFAMILY RING/U-box 719 776 - -
Vvi10g1001 1032 Pfam SNF2-related domain 299 689 IPR000330 GO:0005524|GO:0140658
Vvi10g1001 1032 Gene3D - 627 1031 IPR027417 -
Vvi10g1001 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 612 IPR027417 -
Vvi10g1001 1032 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 574 IPR014001 -
Vvi10g1001 1032 Gene3D - 475 624 IPR038718 -
Vvi10g1001 1032 MobiDBLite consensus disorder prediction 332 348 - -
Vvi10g1001 1032 CDD DEXDc_SHPRH-like 281 612 - -
Vvi10g1001 1032 SMART ultradead3 277 591 IPR014001 -
Vvi10g1001 1032 Pfam Helicase conserved C-terminal domain 878 974 IPR001650 -
Vvi10g1001 1032 MobiDBLite consensus disorder prediction 332 384 - -
Vvi10g1001 1032 MobiDBLite consensus disorder prediction 457 485 - -
Vvi10g1001 1032 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 375 463 - -
Vvi10g1001 1032 SMART ring_2 727 765 IPR001841 -
Vvi10g1001 1032 Gene3D - 375 462 IPR038718 -
Vvi10g1001 1032 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 864 1027 IPR001650 -
Vvi10g1001 1032 CDD SF2_C_SNF 875 983 - -
Vvi10g1001 1032 SMART helicmild6 891 974 IPR001650 -
Vvi10g1001 1032 Pfam Zinc finger, C3HC4 type (RING finger) 727 763 - -
Vvi10g1001 1032 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 123 1031 - -
Vvi10g1001 1032 ProSiteProfiles Zinc finger RING-type profile. 727 763 IPR001841 -
Vvi10g1001 1032 MobiDBLite consensus disorder prediction 1 70 - -
Vvi10g1001 1032 MobiDBLite consensus disorder prediction 457 503 - -
Vvi10g1001 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 1031 IPR027417 -
Vvi10g1001 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 777 IPR013083 -
Vvi10g1001 1032 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 493 624 - -
Vvi10g1001 1032 ProSitePatterns Zinc finger RING-type signature. 742 751 IPR017907 -
Vvi10g1001 1032 Gene3D - 249 344 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g1001 Vvi-Chr10 17289101 17305445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g1001 128 932 RAD5 or RAD16-like Gene Family AT1G50410 59.509 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi10g1001 SNF2_N 4.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g1001 - - vvi:100256075 2019.2