Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0998 ATGTTGCCGATGAACAGTGGCGGCTACAGTAACGGCTACTCCCACCATCCCACGACGGAGAAGCCCCACCGGCAACGGAGGGGTGGACGCCGTCCCCGTGACGGCAGGGACGGCGGCGCAGGGGGCGGTGGCTGGGCTAGGGCTTCAGAGCCTGAGAGGCGGCCTTGTACGGACTTCGATAAGGCATACTTTCAATCGTATTCTCACGTCGGCATTCACGAGGAGATGATCAAGGACCGTGTGCGGACTGAAACATATAAGGCAGCAATCACACAGCATCAGAATTCTATTGCTGGCAAAGTTGTAGTGGATGTTGGCTGTGGCACAGGCATTCTTTCCATATTTTGTGCTCAAGTTGGTGCAAAAAGAGTATATGCTGTGGATGCAAGTGAGATTGCGATTCAGGCAAGTGCAGTTGTCAAAGCAAATAACCTATCTGACACGGTCATTGTTTTGCATGGACGAGTTGAGGATGTTGAAATTGATGAAGGGGTTGATGTTATAATTTCAGAGTGGATGGGTTACATGCTGCTGTATGAGAGCATGCTGGAAAGTGTCATTACCGCTCGAGATCGCTGGCTAAAACCTGGAGGTCTTATTCTTCCTTCAAGTGCAACGTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATATGTCTGCCATGCTGGCATTAGCAAAACAGTGTGCATTTGAAGAGCCGTCTGTAGAGACAATATCGGGTGAAAATGTATTAACATGGCCACATGTGGTAAAGCAGGTAGATTGCTATGCGGTCACGATTGATGAGCTAAAATCTGTTGCAACAAGATATAGGTTTAAATCAATGATGCGAGCTCCACTGCATGGGTTTGCTTTCTGGTTTGACGTTGAATTCAATGGGCCTGCAATTTTTCCTACCAGTACTGATTCTCCATCCTTGTTTATTGGATCTTCAAGCAATAATCCTGTAGATGGTAGTCAGAGAAAGAAACGGTCAAACCCCAATGAAGCCCTTGTGCTGTCCACAGCACCTGAGGATCCTCCAACACATTGGCAACAGACACTGATATACTTATACGAACCAGTGGACCTGGAGCAAGACCAACTCATCGAAGGCTCTGTAACCCTATCACAAAGCAAAGAAAACCCTCGATTCATGAATATACGCCTTGAATATGCTGCTGGGGGCCGAGCATTTGTAAAAGAGTCAGTGATGCGATGA 1245 0.4739 MLPMNSGGYSNGYSHHPTTEKPHRQRRGGRRPRDGRDGGAGGGGWARASEPERRPCTDFDKAYFQSYSHVGIHEEMIKDRVRTETYKAAITQHQNSIAGKVVVDVGCGTGILSIFCAQVGAKRVYAVDASEIAIQASAVVKANNLSDTVIVLHGRVEDVEIDEGVDVIISEWMGYMLLYESMLESVITARDRWLKPGGLILPSSATLYMAPVTHTDRYRDSIDFWRNVYGIDMSAMLALAKQCAFEEPSVETISGENVLTWPHVVKQVDCYAVTIDELKSVATRYRFKSMMRAPLHGFAFWFDVEFNGPAIFPTSTDSPSLFIGSSSNNPVDGSQRKKRSNPNEALVLSTAPEDPPTHWQQTLIYLYEPVDLEQDQLIEGSVTLSQSKENPRFMNIRLEYAAGGRAFVKESVMR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0998 414 MobiDBLite consensus disorder prediction 323 342 - -
Vvi10g0998 414 Pfam Ribosomal protein L11 methyltransferase (PrmA) 98 176 - -
Vvi10g0998 414 Gene3D - 204 412 - -
Vvi10g0998 414 CDD AdoMet_MTases 102 201 - -
Vvi10g0998 414 FunFam Protein arginine N-methyltransferase 6 56 202 - -
Vvi10g0998 414 Gene3D Vaccinia Virus protein VP39 57 202 IPR029063 -
Vvi10g0998 414 MobiDBLite consensus disorder prediction 1 53 - -
Vvi10g0998 414 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 49 402 IPR025799 GO:0016274|GO:0018216
Vvi10g0998 414 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 403 IPR029063 -
Vvi10g0998 414 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 60 397 IPR025799 GO:0016274|GO:0018216
Vvi10g0998 414 MobiDBLite consensus disorder prediction 1 16 - -
Vvi10g0998 414 FunFam Protein arginine N-methyltransferase 6 204 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0998 Vvi-Chr10 17242514 17276256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0998 60 381 C2H2 Transcription Factor Family AT3G12270 37.685 1.92e-62 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0998 K11437 - vvi:100244030 781.941