Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0996 ATGTCCCCCCAACCCAGCTGCATTTTTATAGATGTTAAATATATTCTTTTTTCTCATCTTAATGGCAGAGGTGGGAGTTCAAGTAACAGTACTTCTGTAGGGGAGAGGCTTTTATCTACTTTGCTGACAGAAATGGATGGCTTGGAACAGGCGAAAGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGGTGCTCTATGTACCGCCACCAGACTTAGAAGCTCGCTATGAGATACTGTGTGTGCATACACGAAACATGAGAATAGGGAATGATGTTGATCTGATGCAAATAGCAGAAGACACTGAGCTTTTCACAGGGGCTGAACTGGAGGGCCTGTGTGTGGAAGCTGGAATTGTAGCACTGAGAGAGGATATATCCGCCACTGTGGTGAGCAATCGCCATTTCCAGACTGTCAAAGCTTCCCTGAAGCCGGCATTGACGCAGGCAGAAATCAACTCATACTCTTCATTCATGAAGAACCCATCTTCAAAGCCTTCAACCCAGTTGGAATCAGGTATCAAACATGAGGCCAAGAACTCGATGAACGTTTTGGGTAGCAGTCGAGTTAGGATTGGTGGTTTGAGTTTTTTAGTTCTTGCCATCGCGAAATATTTCCTCACGCATAACTGGCAACTTCTCGAAAGAACTCATCCAACATGA 705 0.4496 MSPQPSCIFIDVKYILFSHLNGRGGSSSNSTSVGERLLSTLLTEMDGLEQAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRNMRIGNDVDLMQIAEDTELFTGAELEGLCVEAGIVALREDISATVVSNRHFQTVKASLKPALTQAEINSYSSFMKNPSSKPSTQLESGIKHEAKNSMNVLGSSRVRIGGLSFLVLAIAKYFLTHNWQLLERTHPT* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0996 234 PANTHER AAA-FAMILY ATPASE 5 177 - -
Vvi10g0996 234 Pfam AAA+ lid domain 106 151 IPR041569 -
Vvi10g0996 234 Gene3D - 1 84 IPR027417 -
Vvi10g0996 234 ProSitePatterns AAA-protein family signature. 54 72 IPR003960 GO:0005524|GO:0016887
Vvi10g0996 234 Gene3D - 85 176 - -
Vvi10g0996 234 Pfam ATPase family associated with various cellular activities (AAA) 4 83 IPR003959 GO:0005524|GO:0016887
Vvi10g0996 234 FunFam spermatogenesis-associated protein 5-like protein 1 85 171 - -
Vvi10g0996 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 169 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0996 Vvi-Chr10 17158964 17161105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0996 5 172 Calmodulin-binding Proteins AT3G56690 40.476 6.41e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0996 - - vvi:100254300 410.609